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make linking python optional
2006-05-22
Diane Trout
make linking python optional
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2006-05-20
Diane Trout
turn color back on
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2006-05-20
Diane Trout
ticket:62 fix local alignment
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2006-05-20
Diane Trout
specify what version of cmake is required
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2006-05-18
Diane Trout
rename the python extension to _mussa.so
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2006-05-18
Diane Trout
expose more of the sequence class to python
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2006-05-17
Diane Trout
finish implementing annotation by sequence
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2006-05-17
Diane Trout
switch to a character based spirit parser
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2006-05-17
Diane Trout
try to read fasta blocks in the annotation file
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2006-05-17
Diane Trout
use spirit parser for reading annot file
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2006-05-16
Diane Trout
add annotations by sequence string
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2006-05-11
Diane Trout
try to make setup.py multiplatform
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2006-05-11
Diane Trout
minor tweaks for building mussa under setup.py
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2006-05-11
Diane Trout
super simple mussa gui driver
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2006-05-11
Diane Trout
build all of mussagl as a python extension
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2006-05-10
Diane Trout
lets try letting python build mussa
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2006-05-10
Diane Trout
increase the use of python in mussa
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2006-05-04
Diane Trout
allow saving aligned window browser to image
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2006-05-04
Diane Trout
show the name of the analysis loaded
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2006-05-04
Diane Trout
allow opening multiple MussaWindows
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2006-04-19
Diane Trout
win32 paths need some conversion
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2006-04-18
Diane Trout
try to get mussagl to build on win32
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2006-04-18
Diane Trout
implement commandline arguments for makedmg
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2006-04-13
Diane Trout
the fasta error message should include the filename
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2006-04-13
Diane Trout
fix ticket:83 throw an error when we don't have a fasta...
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2006-04-13
Diane Trout
create an options structure to indicate if we need...
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2006-04-12
Diane Trout
ticket:85 fix, extend code crashes with 1 path
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2006-04-12
Diane Trout
use a custom target for python extension
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2006-04-12
Diane Trout
record cmake commands to deal with some dependency...
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2006-04-12
Diane Trout
default to building a debug version
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2006-04-12
Diane Trout
put qt gui launching code into a function
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2006-04-12
Diane Trout
AMD64 needs -fPIC for mussa_core
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2006-04-12
Diane Trout
put spaces instead of <TAB> on gui/module.mk
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2006-04-12
Diane Trout
ln -s is not that reliable
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2006-04-12
Diane Trout
build the python interface
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2006-04-11
Diane Trout
minor fixes for older buildsystems
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2006-04-08
Diane Trout
rename _LIB to _LIBRARY to be more consistent with...
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2006-04-07
Diane Trout
build fltk version and deal with debian qt4 weirdness
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2006-04-07
Diane Trout
make include gl.h multiplatform
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2006-04-07
Diane Trout
switch to using boost::filesystem
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2006-04-07
Diane Trout
put build environment support tools in makelib
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2006-04-06
Diane Trout
cmake setupfiles
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2006-04-04
Diane Trout
QSplitter has rendering problems on os x
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2006-04-04
Diane Trout
an int signal doesn't connect to a size_t slot
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2006-04-04
Diane Trout
allow making dmgs for things other than mussa
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2006-03-30
Diane Trout
allow running without using the gui
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2006-03-30
Diane Trout
better setup dialog label names
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2006-03-29
Diane Trout
keep the sequence view at higher zoom level
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2006-03-29
Diane Trout
motifs should render on top of annotations
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2006-03-29
Diane Trout
make annotations big enough to show up
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2006-03-29
Diane Trout
View sequence alignment at non default thresholds
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2006-03-29
Diane Trout
choose alignment needs to force the sequences to redraw
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2006-03-29
Diane Trout
Provide a zoom widget in MussaAlignedWindow
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2006-03-29
Diane Trout
Move zoom spinbox into its own widget
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2006-03-29
Diane Trout
setAlignment, as a target of a qt signal, needs to...
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2006-03-29
Diane Trout
ignore some generated product
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2006-03-28
Diane Trout
fix more warnings
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2006-03-28
Diane Trout
threshold widget shows both base pair and percents
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2006-03-28
Diane Trout
recover threshold and window size
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2006-03-28
Diane Trout
improve os x makefiles
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2006-03-28
Diane Trout
use qt resources for icons
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2006-03-23
Diane Trout
disable coloring things with reverse compliment colors.
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2006-03-23
Diane Trout
define an analysis should keep settings
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2006-03-23
Diane Trout
change from slider to spinner for threshold
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2006-03-23
Diane Trout
better sidebar rendering
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2006-03-22
Diane Trout
fix selection box coordinate bugs
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2006-03-22
Diane Trout
spurious mouseReleaseEvent caused a crash
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2006-03-22
Diane Trout
finish dialog box to setup an analysis
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2006-03-22
Diane Trout
Increase line thickness
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2006-03-22
Diane Trout
provide more information in the about box.
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2006-03-22
Diane Trout
bless osx Qt components and make a .dmg
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2006-03-21
Diane Trout
tell doxygen about motif_editor and mussa_setup_dialog
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2006-03-21
Diane Trout
provide a user interface to edit motifs
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2006-03-21
Diane Trout
resizing should also change the sequence position indicators
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2006-03-21
Diane Trout
hopefully this fixes the off by one error
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2006-03-21
Diane Trout
when changing alignment the position also needs to...
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2006-03-21
Diane Trout
set inital left position
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2006-03-20
Diane Trout
resizing increases the viewable world
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2006-03-20
Diane Trout
changing the set of links does need to redraw
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2006-03-20
Diane Trout
Mussa aligned sequence view seems to work
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2006-03-20
Diane Trout
dont crash when loading a new analysis
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2006-03-19
Diane Trout
draw alignment lines
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2006-03-19
Diane Trout
render sequence correctly in mussa aligned window
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2006-03-19
Diane Trout
implement zoom in terms of base pairs per pixel
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2006-03-18
Diane Trout
center on path
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2006-03-18
Diane Trout
define window for showing a mussa alignment
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2006-03-17
Diane Trout
refactored PathScene into SequenceBrowserWidget
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2006-03-16
Diane Trout
specify where the gl.h is on a mac
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2006-03-16
Diane Trout
fix motif coloring
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2006-03-16
Diane Trout
track labels
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2006-03-16
Diane Trout
re-implement selection
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2006-03-16
Diane Trout
computation for a path segment was wrong
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2006-03-15
Diane Trout
fix the scrollbar
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2006-03-15
Diane Trout
make the path view independent of type of connection
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2006-03-14
Diane Trout
make doxygen output more focused
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2006-03-14
Diane Trout
load and display a motif list
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2006-03-14
Diane Trout
document win_append, thres_append
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2006-03-14
Diane Trout
just load the sequence
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2006-03-14
Diane Trout
rename motif class used in fltk code to fltk_motif
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2006-03-14
Diane Trout
attach motifs to a sequence object
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