woldlab.caltech.edu Git - htsworkflow.git/search

2009-04-23	Tim Reddy Tim	patched to handle new pf file format with generality...	commit \| commitdiff \| tree
2009-02-23	Tim Reddy Tim	Small bug fix	commit \| commitdiff \| tree
2009-01-12	Tim Reddy Tim	Added file to flatten fasta as prep for bioprospector	commit \| commitdiff \| tree
2009-01-05	Tim Reddy Tim	Change over from wiggle files to bedgraph files to...	commit \| commitdiff \| tree
2009-01-04	Tim Reddy Tim	Added new profile program to make a bedgraph file....	commit \| commitdiff \| tree
2009-01-03	Tim Reddy Tim	Added new program to profile reads using bedgraph format...	commit \| commitdiff \| tree
2008-12-24	Tim Reddy Tim	Initial check in of c++ short read programming library...	commit \| commitdiff \| tree
2008-12-24	Tim Reddy Tim	Bugfixes	commit \| commitdiff \| tree
2008-12-23	Tim Reddy Tim	Working on a bug fix...	commit \| commitdiff \| tree
2008-12-23	Tim Reddy Tim	Added code to identify snps and update the gneome accordingl...	commit \| commitdiff \| tree
2008-12-16	Tim Reddy Tim	Forgot to add count_reads.pm script	commit \| commitdiff \| tree
2008-12-16	Tim Reddy Tim	Updated read counts to give information about aligment...	commit \| commitdiff \| tree
2008-12-12	Tim Reddy Tim	Small edits to make code nicer.	commit \| commitdiff \| tree
2008-12-12	Tim Reddy Tim	Initial checkin of code to evaluate known snps from...	commit \| commitdiff \| tree
2008-12-12	Tim Reddy Tim	Final installation of methylseq analysis.	commit \| commitdiff \| tree
2008-12-12	Tim Reddy Tim	(no commit message)	commit \| commitdiff \| tree
2008-12-08	Tim Reddy Tim	Added hg18 known genes file from ucsc	commit \| commitdiff \| tree
2008-12-08	Tim Reddy Tim	Bug fixes to bring up methylseq analysis Tasks	commit \| commitdiff \| tree
2008-12-08	Tim Reddy Tim	Added framework for methylseq analysis.	commit \| commitdiff \| tree
2008-12-03	Tim Reddy Tim	Bug-fixes in sequence repository code and projects...	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	minor typo.	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Small change to handle the odd case when no alignment...	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Minor typeo fix	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Re-factored the repository to automatically calculate...	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Major analysis server update. Had to switch to a new...	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Added script front-end for primer-design code	commit \| commitdiff \| tree
2008-11-25	Tim Reddy Tim	Added qPCR Validation design code	commit \| commitdiff \| tree
2008-11-24	Tim Reddy Tim	Add validation primer code to MACS source	commit \| commitdiff \| tree
2008-11-24	Tim Reddy Tim	Moving QC functionalty into repository so we can run...	commit \| commitdiff \| tree
2008-11-24	Tim Reddy Tim	Removed from hard-coded directories. Starting to bring...	commit \| commitdiff \| tree
2008-11-24	Tim Reddy Tim	Changes the install line to be a copy instead of a...	commit \| commitdiff \| tree
2008-09-03	Tim Reddy Tim	Updates to profile reads to be more general in how...	commit \| commitdiff \| tree
2008-08-30	Tim Reddy Tim	Added installation notes	commit \| commitdiff \| tree
2008-08-29	Tim Reddy Tim	Added MACS source	commit \| commitdiff \| tree
2008-08-29	Tim Reddy Tim	Minor typos fixes	commit \| commitdiff \| tree
2008-08-28	Tim Reddy Tim	First complete Projects/Tasks build.	commit \| commitdiff \| tree
2008-08-28	Tim Reddy Tim	Added a program to help compare libraries	commit \| commitdiff \| tree
2008-08-21	Tim Reddy Tim	Tasks functionality added. Lots of cleanup to do, but...	commit \| commitdiff \| tree
2008-08-20	Tim Reddy Tim	Added align_to_bed script. Used to turn MACS output...	commit \| commitdiff \| tree
2008-08-20	Tim Reddy Tim	Added wiggle fiole generation	commit \| commitdiff \| tree
2008-08-20	Tim Reddy Tim	Quest_2_bed conversaion added.	commit \| commitdiff \| tree
2008-08-19	Tim Reddy Tim	Added auxillliary programs needed to run projects	commit \| commitdiff \| tree
2008-08-19	Tim Reddy Tim	Smalle bug fix	commit \| commitdiff \| tree
2008-08-19	Tim Reddy Tim	added comm module of communication.	commit \| commitdiff \| tree
2008-08-19	Tim Reddy Tim	Added communitaion between projects and lims	commit \| commitdiff \| tree
2008-08-19	Tim Reddy Tim	Initial attempt to get Projects and Tasks framework...	commit \| commitdiff \| tree
2008-08-18	Tim Reddy Tim	Major bug-fix where some probes in the in-silico qPCR...	commit \| commitdiff \| tree
2008-08-18	Tim Reddy Tim	Small change to fix directory structure problem	commit \| commitdiff \| tree
2008-08-14	Tim Reddy Tim	Fixed another directory problem: the libraries repo...	commit \| commitdiff \| tree
2008-08-14	Tim Reddy Tim	Fixed directories to be more general and easy to set...	commit \| commitdiff \| tree
2008-08-14	Tim Reddy Tim	Fixed bug that bailed on empty alignment files. (weird...	commit \| commitdiff \| tree
2008-08-14	Tim Reddy Tim	Took our some old targets from the Makefile that are...	commit \| commitdiff \| tree
2008-08-14	Tim Reddy Tim	Made changes to add quarterly information to the sequencign...	commit \| commitdiff \| tree
2008-08-13	Tim Reddy Tim	Big steps on getting the library automation going....	commit \| commitdiff \| tree

htsworkflow sequencing LIMS software

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