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htsworkflow.git
2012-01-25 Diane TroutChanged pprint daf attributes to a pformat output via... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutFix 'typo' in a library URN. commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutDon't use assertIn as older ubuntu python doesn't have it commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutInvalid library IDs should 404, not return a useless... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-12-20 Diane Troutwhitespace reformatting commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutRemove eXecute bit from modules commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutInclude the test data for testing importing ucsc downlo... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutAdd in test code for testing downloading the ucsc downl... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutDeleted obsolete tests commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... commit | commitdiff | tree | snapshot
2011-11-22 Diane TroutAdd a method to override command used to convert srf... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUse Node.uri instead of manually trimming off RDF.Node... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutFunction generating index text was assuming there'd... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUpdate library adapter type initial data to match lorie... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutMerge in removal of queuecommand sleep. commit | commitdiff | tree | snapshot
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-11-04 Diane TroutUse a logger initialized to the module name much more... commit | commitdiff | tree | snapshot
2011-11-04 Diane TroutLorian renamed some of the libraries, change our hard... commit | commitdiff | tree | snapshot
2011-10-21 Diane TroutYes generate regular gerald config file. commit | commitdiff | tree | snapshot
2011-10-18 Diane TroutAdd library adapter type to filter choices, commit | commitdiff | tree | snapshot
2011-10-13 Diane TroutAllow replicates 5 & 6 commit | commitdiff | tree | snapshot
2011-10-11 Diane TroutUse "not run" instead of todo to describe libraries... commit | commitdiff | tree | snapshot
2011-10-11 Diane TroutAdd a todo view that shows only libraries that have no commit | commitdiff | tree | snapshot
2011-10-10 Diane TroutRemove ReadPrep and Thumbnail_Images being generated... commit | commitdiff | tree | snapshot
2011-10-10 Diane TroutDon't need to duplicate %t tile in srf command commit | commitdiff | tree | snapshot
2011-10-06 Diane TroutAdd the ability to specify a flowcell id instead of... commit | commitdiff | tree | snapshot
2011-10-04 Diane TroutAdd support for flowcells analyzed with Casava 1.7 commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutSparql query to back create protocol & treatment from... commit | commitdiff | tree | snapshot
2011-09-30 Diane Troutfind submissions, even those without a set creation... commit | commitdiff | tree | snapshot
2011-09-30 Diane Troutstore md5sum of daf files to group different submissions commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutAdd support for new "extraVariables" term in DAF. commit | commitdiff | tree | snapshot
2011-09-22 Diane TroutMark library & flowcell as a type in RDF. commit | commitdiff | tree | snapshot
2011-09-21 Diane TroutSwitch from beautifulsoup to lxml, now that I know... commit | commitdiff | tree | snapshot
2011-09-21 Diane TroutRename ucsc submission namespace to be more consistent... commit | commitdiff | tree | snapshot
2011-09-19 Diane TroutOutput samples that don't have index sequence as well. commit | commitdiff | tree | snapshot
2011-09-19 Diane TroutPython 2.6's DictWriter doesn't have writeheader, so... commit | commitdiff | tree | snapshot
2011-09-17 Diane TroutDisable csrf protection for the json urls commit | commitdiff | tree | snapshot
2011-09-17 Diane TroutAdd support for tracking the multiplex index sequence. 0.5.4 commit | commitdiff | tree | snapshot
2011-09-12 Diane TroutAdd support for first-gen HiSeq flowcells (e.g. ABXX) commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutDjango 1.1's csrf protection appears to be handled... 0.5.3 commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutAdd links to the admin page on the public pages if... commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutMake it so the login link redirects you back to the... commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutEmacs stripped off trailing whitespace commit | commitdiff | tree | snapshot
2011-09-07 Diane TroutAdd link to admin page to flowcell & library pages... commit | commitdiff | tree | snapshot
2011-09-07 Diane TroutRemove margin-right command as it was making a giant... commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutIgnore some files generated by my (diane's) development... commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutAttempt to download DAF data for a encodesubmit submission commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutAdd error message for requesting link-daf but no daf... commit | commitdiff | tree | snapshot
2011-08-31 Diane TroutEnable csrf proection when running under Django 1.2 commit | commitdiff | tree | snapshot
2011-08-18 Diane TroutRescan a flowcell data run once per (setting.RESCAN_DEL... commit | commitdiff | tree | snapshot
2011-08-08 Diane TroutDeal with (failed) in flowcell names. commit | commitdiff | tree | snapshot
2011-08-04 Diane TroutAdd a way to browse the list of entered antibody/antigene commit | commitdiff | tree | snapshot
2011-07-29 Diane TroutMake a test more robust to different versions of librdf commit | commitdiff | tree | snapshot
2011-07-29 Diane TroutConstruct unit tests for inventory/hard disk long term... commit | commitdiff | tree | snapshot
2011-07-28 Brandon W.... An improvement on the inventory system. Getting it... commit | commitdiff | tree | snapshot
2011-07-28 Diane TroutExamine the DAF to determine if the DDF needs to includ... commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutStop copying attributes from library to a submission... commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutRemove spurious debugging print statement commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutAdd an option to print out an example view to extension... commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutMake searching library & cell line more robust to missi... commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutSearch for both encode & mouse encode projects. commit | commitdiff | tree | snapshot
2011-07-20 Diane TroutUpdate old dt-overrides.turtle example to use the newer... commit | commitdiff | tree | snapshot
2011-07-13 Diane TroutMake antibody catalog number optional for creating... 0.5.2 commit | commitdiff | tree | snapshot
2011-07-13 Diane TroutMake sure we can roundtrip unicode characters via conve... commit | commitdiff | tree | snapshot
2011-07-09 Diane TroutAdd "Count of multi-reads" back into the library page commit | commitdiff | tree | snapshot
2011-07-07 Diane TroutDon't use xsd:string for string data types in toTypedNode commit | commitdiff | tree | snapshot
2011-07-07 Diane TroutLibrary urls have a trailing /. make sure the test... commit | commitdiff | tree | snapshot
2011-07-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-07-07 Diane TroutFix namespace issues in encode_find after the conversion commit | commitdiff | tree | snapshot
2011-07-06 Diane TroutAdd some additional logging to util/rdflib.py to help... commit | commitdiff | tree | snapshot
2011-07-01 Diane TroutMake sure that the lane set is sorted on the flowcell... commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutThe proper DDF variable name for files to be submitted... commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutOlder librdf gets cranky when mixing unicode & strings commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutDjango 1.1 doesn't support validators so remove it... commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutFix typo in a template commit | commitdiff | tree | snapshot
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-06-30 Diane Troutswitch fix_ob3 to the better way of finding settings... commit | commitdiff | tree | snapshot
2011-06-29 Diane TroutFurther clean up ddf generation. commit | commitdiff | tree | snapshot
2011-06-28 Diane TroutStart supporting multiple libraries per lane, as needed... commit | commitdiff | tree | snapshot
2011-06-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-06-22 Diane TroutSlightly alter some tests to work with versions of... commit | commitdiff | tree | snapshot
2011-06-22 Diane TroutMove parse_flowcell_id out of frontend.samples.results commit | commitdiff | tree | snapshot
2011-06-22 Diane Troutallow running ucsc_gather --fastq without specifying... commit | commitdiff | tree | snapshot
2011-06-21 Diane TroutFinish new RDF based ddf construction. commit | commitdiff | tree | snapshot
2011-06-18 Diane TroutRework ucsc gather to use RDF models for gathering... commit | commitdiff | tree | snapshot
2011-06-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-06-18 Diane TroutInclude the library_id in addition to the RDFa library uri commit | commitdiff | tree | snapshot
2011-06-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-06-17 Diane TroutMinor RDFa fixes. commit | commitdiff | tree | snapshot
2011-06-15 Diane TroutStart to move all the RDF namespace definitions into... commit | commitdiff | tree | snapshot
2011-06-15 Diane TroutAdd module to parse UCSC DAF file. commit | commitdiff | tree | snapshot
2011-06-15 Diane TroutMove code to make srf and qseq to fastq condor scripts... commit | commitdiff | tree | snapshot
2011-06-15 Diane TroutSample Test RDFA needed the flowcell id field commit | commitdiff | tree | snapshot
2011-06-15 Diane TroutRemove some uneeded linefeeds commit | commitdiff | tree | snapshot
2011-06-14 Diane TroutFix a template typo commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software