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htsworkflow.git
2013-10-17 Diane TroutDynamically respond to the number of lanes. commit | commitdiff | tree | snapshot
2013-01-16 dianeAdd more entries to genome version detection map. commit | commitdiff | tree | snapshot
2012-12-12 Diane TroutSimplify linking fastq files to their library id. commit | commitdiff | tree | snapshot
2012-12-08 Diane TroutAdd a FastqName class to create and parse standardized... commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutRemove prints that were being called in test code. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutChanged name= to verbose_name= for LibraryType. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMake extra sure Django's setup test environment is... commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutIgnoring the missing type RDF error for the page under... commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutAdd dependencies to the setup.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutTest presence of species & species name on library... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutCorrectly implement merging Notification & Manager... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRenamed various django tests.py to test_module.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutIgnore .tox directory commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRun the library detail page through RDF validation. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutChange add_default_schema to use pkg_resources feature... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutAdd dependency information to the setup.py script commit | commitdiff | tree | snapshot
2012-11-20 Diane Troutrdf:Resource can be either a resource or a blank node. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutUniquely merge BCC and Manager lists for sending notifi... commit | commitdiff | tree | snapshot
2012-11-16 Diane TroutFurther attempts to validate RDF models. commit | commitdiff | tree | snapshot
2012-11-14 Diane TroutAdd error message for typoing a result map filename. commit | commitdiff | tree | snapshot
2012-11-14 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-10-11 Diane TroutCatch another lookup error. commit | commitdiff | tree | snapshot
2012-09-27 Diane Troutolder librdf wanted to include type information when... commit | commitdiff | tree | snapshot
2012-09-27 Diane TroutWhen collecting files for a geo submission, group on... commit | commitdiff | tree | snapshot
2012-09-25 Diane TroutThis might actually generate soft file with raw & suppl... commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutAdd a log message to for debugging commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutDefine XHTML_RDF_DTD as None when we can't load the DTD commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutMake the public html pages valid xhtml, and validate... commit | commitdiff | tree | snapshot
2012-09-24 Diane Troutremove some dead commented out code. commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutFix (some) missing closing tags. commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutMake a validation error message between different ages... commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutAlso make the library index page conform to htsworkflow... commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutMinor tweaks to deal with the older version of librdf... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutRefactor property type validator to support multiple... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutAdd stub xhtml vocab ontology, to make model validation... commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-09-18 Diane Troutemail.bcc should be a list, not a nested list. commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutImprovements to rdfinfer. commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutChange rdfhelp.dump_model so you can specify a destinat... commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutProgress using rdf model to link fastqs with flowcell... commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-09-15 Diane TroutStart implementing infering triples. commit | commitdiff | tree | snapshot
2012-09-12 Diane TroutBe more defensive if the database is missing some data... commit | commitdiff | tree | snapshot
2012-09-12 Diane Troutfix a wrong variable name commit | commitdiff | tree | snapshot
2012-09-12 Diane TroutTweaks to make the sample gather query faster. commit | commitdiff | tree | snapshot
2012-09-12 Diane TroutAdd a helpful error message when we need the submission... commit | commitdiff | tree | snapshot
2012-09-12 Diane TroutAnother tweak to allow parser detection to work on... commit | commitdiff | tree | snapshot
2012-09-11 Diane TroutBetter parser guessing when grabbing plain text from... commit | commitdiff | tree | snapshot
2012-09-10 Diane TroutUse the same model for building fastqs as for building... commit | commitdiff | tree | snapshot
2012-09-10 Diane TroutAllow retrying retrieving rdf from website a few times. commit | commitdiff | tree | snapshot
2012-09-01 Diane TroutImport flowcell information into our model this allows commit | commitdiff | tree | snapshot
2012-09-01 Diane TroutHave librdf open the urls in load_into_model instead... commit | commitdiff | tree | snapshot
2012-09-01 Diane TroutAutomatically add the flowcell subdirectory to the... commit | commitdiff | tree | snapshot
2012-08-31 Diane TroutOlder rdf library doesn't like unicode strings as nodes commit | commitdiff | tree | snapshot
2012-08-31 Diane TroutFix matching scanned sequence files to library IDs... commit | commitdiff | tree | snapshot
2012-08-31 Diane TroutInherit from MutableMapping for ResultMap. commit | commitdiff | tree | snapshot
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutTest RDFa encoded information for flowcell & libraries. commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-28 Diane Troutsanitize_literal had trouble with empty strings. commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutAttempt to come up with regexp to detect hiseq formatte... commit | commitdiff | tree | snapshot
2012-08-09 Diane TroutFix some mismatches between variable names in python... commit | commitdiff | tree | snapshot
2012-08-07 Diane TroutCreate a lane to file name turtle data file commit | commitdiff | tree | snapshot
2012-08-07 Diane TroutSimplify code to see if we already have a DataRun created. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutDon't link to lane for the raw result files section. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutUse default printer settings again. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutTest proper setting of sequence project variable commit | commitdiff | tree | snapshot
2012-08-02 Diane TroutTest more of the sequences class. commit | commitdiff | tree | snapshot
2012-08-02 Diane TroutFix a few more formatting issues with the geo template commit | commitdiff | tree | snapshot
2012-08-01 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-01 Diane TroutGEO wanted both files for a paired lane to be on a... commit | commitdiff | tree | snapshot
2012-07-27 Diane TroutFix issues introduced when switching to the django... commit | commitdiff | tree | snapshot
2012-07-25 Diane TroutActually we want to capture the unanalyzed lanes if... commit | commitdiff | tree | snapshot
2012-07-24 Diane TroutGet actual list of sequencers used for a library. commit | commitdiff | tree | snapshot
2012-07-23 Diane TroutUpdate to our current IPs. I'm tired of syncdb overwrit... commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutAdapt building qseq or srf archives to use SampleKey... commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutUpdate save_raw_data to SampleKey api commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutAdd in a few more genomes to detection code commit | commitdiff | tree | snapshot
2012-07-17 Diane TroutFix library viewing code to read HiSeq run xmls. commit | commitdiff | tree | snapshot
2012-07-16 Diane TroutRemove default sequence-format so the new auto-detector... commit | commitdiff | tree | snapshot
2012-07-14 Diane TroutAttempt to guess raw sequence type for a run. commit | commitdiff | tree | snapshot
2012-07-13 Diane TroutFix a refactoring error commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutLook for RTAConfig.xml file generated by pipeline 1... commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutUse lane 1s matrix when pipeline was set to build matri... commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutClean up flowcell ID detection and add support for... commit | commitdiff | tree | snapshot
2012-07-12 Diane Troutfix a variable name typo commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutRe-enable some suppressed tests and update them for... commit | commitdiff | tree | snapshot
2012-07-12 Diane Troutwhitespace fix. commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software