htsworkflow.git
2009-06-22 Brandon KingSlight schema update to inventory_longtermstorage 0.2.5
2009-06-22 Brandon KingSchema update to inventory
2009-06-20 Diane TroutSend the specific directory that needs to be copied...
2009-06-19 Diane TroutI started using ResultLane, so stop treating it like...
2009-06-17 Diane TroutAdd support for extracting data out of Illumina's new...
2009-06-17 Diane TroutAdd a hack to add a frontend section if not present
2009-06-17 Diane TroutLoading really old run xml files caused the website...
2009-06-17 Diane TroutIgnore *.py[co~] files to make svn status happier
2009-06-17 Diane TroutAdd stub uuid function to make this module import when...
2009-06-17 Diane Troutremove spurious debug print statements
2009-06-17 Brandon KingArg... spelling!
2009-06-17 Brandon KingOnce again, assumed I had a flowcell object when I...
2009-06-17 Brandon KingApparently we might be receiving None, so this check...
2009-06-17 Brandon King * Fixed urls for result_fc_cnm_eland_lane and summaryh...
2009-06-16 Brandon KingUpdated Library view to show an icon if a record exists...
2009-06-16 Diane TroutThe error being thrown by benderjab changed slightly.
2009-06-16 Diane TroutSplit rsync initialization out of run so we can test
2009-06-16 Diane TroutFixed a couple of problems.
2009-06-16 Diane TroutUpdate test copier code for the changes in the copier...
2009-06-16 Brandon KingIcon added.
2009-06-16 Brandon KingManaged to use a urllib python 2.6 feature... convertin...
2009-06-16 Brandon KingMinor package update.
2009-06-16 Brandon KingUpdated installtion script:
2009-06-15 Diane TroutAllow searching by library name on the experiments...
2009-06-10 Brandon KingImproved debugging output.
2009-06-10 Brandon KingMoved hardcoded URL to it's proper place in the setting...
2009-06-10 Brandon KingTrack which flowcells are archived on which long term...
2009-06-10 Diane TroutScan more than one rsync repository for directory trees...
2009-06-09 Diane TroutAdd code to construct a copy url using a mapping in...
2009-06-05 Brandon KingMinor updates to inventory schema based on input from...
2009-06-05 Diane TroutPyinotify behaves oddly when the stdio file descriptors...
2009-06-04 Brandon KingA simple command to request the hard drive serial numbe...
2009-06-01 Diane TroutConsistently use 'watchdir' instead of 'watch_dir'...
2009-05-30 Diane TroutWatch more than one directory tree for modification.
2009-05-30 Diane TroutDon't print the discovered mount point.
2009-05-29 Brandon KingFirst attempt at an inventory tracking database
2009-05-27 Diane TroutAdd a minimal test case to test a small bit of the...
2009-05-11 Diane TroutMore consistently split the flowcell id and status...
2009-05-11 Diane TroutFix parameter list for base class.
2009-05-06 Diane TroutUpdate htsworkflow.util.fctracker module to work with...
2009-05-05 Diane TroutUpdate the django app to report "raw reads" for a seque...
2009-05-05 Diane TroutHandle lanes that were only sequenced.
2009-05-05 Diane TroutReturn NaN, NaN if a mean +/- deviation value was undef...
2009-05-05 Diane TroutAllow overriding the queued commands environment.
2009-05-01 Diane TroutAdd wait_for_ipar option to the spool watcher config...
2009-04-30 Diane TroutAllow mapping library IDs to the library primary key
2009-04-24 Diane Troutadd --clean option to runfolder
2009-04-24 Diane TroutAllow picking runfolder variant we should be trying...
2009-04-08 Diane TroutStop assuming that library_id == pk.
2009-04-04 Diane TroutDon't crash if we can't find the flowcell run xml file
2009-04-04 Diane TroutDisplay the affiliations on the public library detail...
2009-04-01 Diane TroutShow the "Amplified from sample" as the parent library...
2009-03-31 Diane TroutUse the image directory name to detect what type of...
2009-03-31 Diane TroutDon't attempt to save xml for a matrix in firecrest...
2009-03-31 Diane Troutremove some useless debugging print statements
2009-03-31 Diane Troutprovide an error message if no run is found with the...
2009-03-30 Diane TroutAdd unit test to check that the crosstalk matrix was...
2009-03-30 Diane TroutIPAR detection is more reliable than firecrest so do...
2009-03-30 Diane TroutAllow specifying a run instead of just scanning the...
2009-03-30 Diane TroutAdd some logging code to report what the program is...
2009-03-28 Diane TroutFor pipeline 1.1rc1 or 1.3.2, look for the matrix files...
2009-03-28 Diane TroutMove sample data from simulate_runfolder into testdata
2009-03-25 Diane TroutMake the visiable names match how the "group" and ...
2009-03-20 Diane TroutConsume output form the subprocesses
2009-03-18 Diane TroutActually we want fastq files, not scarf files
2009-03-18 Diane TroutGenerate a gerald config file, even if the genome is...
2009-03-18 Diane Troutprovide more options for picking how much logging info...
2009-03-18 Diane Troutonly report cwd when starting the queue monitor, not...
2009-03-18 Diane Troutignore *.py[co] files
2009-03-16 Diane TroutParse runfolders generated with IPAR 1.3 and pipeline...
2009-03-12 Diane TroutUse django's FilteredSelectMultiple javascript widget...
2009-03-12 Diane Troutallow searching by cluster station or sequencer name...
2009-03-10 Diane TroutWe can't search linked tables. This is a problem that...
2009-03-10 Diane TroutThe public library page needed to pass eland.genome_map...
2009-03-10 Diane TroutImprove support for eland searching a single fasta...
2009-03-10 Diane TroutUse gigio's fully name instead of nickname
2009-03-10 Diane TroutLet cluster_station and sequencer default to the first...
2009-03-09 Diane Troutreplace % with %% in the library names, so retrieve...
2009-03-09 Diane TroutChange flowcell admin index page to include a formatted...
2009-03-09 Diane TroutChange default picomolarity to 5, and allow overriding...
2009-03-09 Diane TroutAdd commented htsworkflow.ini.example as documentation...
2009-03-09 Diane TroutSort by library id, not creation data closes [ticket...
2009-03-09 Diane TroutAdd flowcell notes field back to the admin page
2009-03-07 Diane Troutflowcell model moved from samples to experiments, eland...
2009-03-07 Diane TroutThe default django css pages wanted a few gifs, which...
2009-03-07 Diane TroutGrab more of the admin css pages that were refering...
2009-03-07 Diane TroutDisplay the pM on the public library detail page.
2009-03-07 Diane TroutAllow filtering by the new hidden field on the library...
2009-03-07 Diane TroutLorian asked that the library size default to 225 when...
2009-03-06 Diane TroutMake the public library browsing page support several...
2009-03-06 Diane TroutAdd another username to manage for our made_for to...
2009-03-04 Diane TroutAdd get_absolute_url to Library model and use it for...
2009-03-04 Diane TroutImplement experiment type as a seperate table.
2009-03-04 Diane TroutChange cluster_mac_id and seq_mac_id from text fields...
2009-03-04 Diane TroutFor one of our more recent libraries, the successful_pM...
2009-02-28 Diane TroutAdd a link to the public library summary page off from...
2009-02-27 Diane TroutAdd my script to convert Caltech's made_for field to...
2009-02-27 Diane TroutUpdate some of Rami's GERALD config file generator...
2009-02-27 Diane TroutOnly configure logging if we're being run as a script
2009-02-26 Diane Troutbetter handle the case when Affilations.contact is...
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