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Store Sequence sequence location in a shared_ptr class
[mussa.git] / alg /
2007-03-20 Diane TroutStore Sequence sequence location in a shared_ptr class tree | commitdiff
2007-03-08 Diane Troutadd a useful comment tree | commitdiff
2007-02-20 Diane Troutmore error messages for loading an annotation. tree | commitdiff
2007-02-14 Brandon KingAdded newline char to end of line (remove compile warning) tree | commitdiff
2007-01-05 Diane Troutadd some newlines at the end of some of our files tree | commitdiff
2007-01-04 Diane Troutconditionally build the paircomp tests tree | commitdiff
2007-01-04 Diane Troutpaircomp used the string find_first_not_of tree | commitdiff
2007-01-04 Diane Troutsplit unittests into seperate executables tree | commitdiff
2006-12-14 Diane Troutlen(mussa.paths()) should equal the number of found... tree | commitdiff
2006-12-05 Diane Troutprovide python interpreter for mussa qui via a seperate... tree | commitdiff
2006-11-29 Diane Troutadd python interface to seqcomp tree | commitdiff
2006-11-22 Diane TroutFinish off setting sequence offset user interface tree | commitdiff
2006-11-17 Diane Troutmore fs::native for user supplied paths tree | commitdiff
2006-10-30 Diane Troutinclude filename in unparsable annotation error message tree | commitdiff
2006-10-30 Diane Troutreport filename for invalid fasta files tree | commitdiff
2006-10-28 Diane Troutcompute the correct starting window size tree | commitdiff
2006-10-27 Diane Troutimplement set window state tree | commitdiff
2006-10-26 Diane Troutadd copy sequence as string option tree | commitdiff
2006-10-26 Diane Troutdisplay number of basepairs copied tree | commitdiff
2006-10-20 Diane Troutadd nl to end of 3 files tree | commitdiff
2006-10-20 Diane Troutcopy motifs to a new subanalysis tree | commitdiff
2006-10-19 Diane Troutfix motif loader under release build tree | commitdiff
2006-10-19 Diane TroutSequence::rev_comp works on subsequences tree | commitdiff
2006-10-18 Diane Troutadd to_upper_case to some sequence unittests tree | commitdiff
2006-10-17 Diane Troutbe more forging of user provided file names tree | commitdiff
2006-10-17 Diane Troutremove old code tree | commitdiff
2006-10-17 Diane Troutchanging motifs should make the analysis dirty tree | commitdiff
2006-10-17 Diane Troutforce loaded sequence to uppercase tree | commitdiff
2006-10-17 Diane Troutdon't link against X11 on OS X tree | commitdiff
2006-10-14 Diane Troutdon't seqcomp sequences that are too small tree | commitdiff
2006-10-14 Diane Troutadd operator< to ConservedPath tree | commitdiff
2006-10-13 Brandon KingSave to image fix (ticket:96) tree | commitdiff
2006-10-13 Diane Troutsave motifs with the analysis tree | commitdiff
2006-10-12 Diane Troutbetter glyph offset computation tree | commitdiff
2006-10-12 Diane Troutdoes createLocalAlignment work for a 3 way? tree | commitdiff
2006-10-11 Diane Troutadd Mussa::save_motif() tree | commitdiff
2006-10-11 Diane Troutthrow errors when spirit parsing fails tree | commitdiff
2006-10-11 Diane Trouta title of path("/my/silly/path") doesn't work on windows tree | commitdiff
2006-10-11 Diane Troutuse lines if a quad would be smaller than a pixel tree | commitdiff
2006-10-10 Diane Troutimplement alphabet for sequence tree | commitdiff
2006-10-05 Diane Troutlength 1 segments should be drawn as lines tree | commitdiff
2006-10-05 Diane Troutdraw link lines with a width tree | commitdiff
2006-10-04 Diane Troutadd --motifs tree | commitdiff
2006-10-04 Diane Troutfixes for Mussa::load_motif tree | commitdiff
2006-10-04 Diane Troutcolors should default to being visible tree | commitdiff
2006-10-03 Diane TroutAdd window titles tree | commitdiff
2006-06-15 Diane Troutfix wrong parent for scrollable_browser tree | commitdiff
2006-10-03 Diane TroutDeath to stupid mussa pointers tree | commitdiff
2006-09-19 Diane Troutcatch possible segfault with get_sequence() tree | commitdiff
2006-09-15 Diane Troutuse the loaded analysis path as the default save path tree | commitdiff
2006-09-15 Diane Troutkeep track of a subsequences parent tree | commitdiff
2006-09-15 Diane Troutreport our "start/stop" location on a subsequence tree | commitdiff
2006-09-15 Diane Troutuse an enum instead of a bool for strandedness tree | commitdiff
2006-09-15 Diane Troutmake our Color class serializable tree | commitdiff
2006-09-14 Diane Troutmake sure we show the start of our sequence name tree | commitdiff
2006-09-14 Diane TroutImplement an optional name in the motif parser tree | commitdiff
2006-09-12 Diane Troutimplement "typical" save and close conventions. tree | commitdiff
2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis... tree | commitdiff
2006-09-12 Diane Troutadd seq_forward tree | commitdiff
2006-09-09 Diane Troutmake really sure load_mupa has a file to parse. tree | commitdiff
2006-09-08 Diane Troutsubsequences now use offsets into the shared_ptr seq_string tree | commitdiff
2006-09-08 Diane Troutcatch a few more potential unchecked shared_ptr derefer... tree | commitdiff
2006-09-07 Diane Troutremove commented out string conversion tree | commitdiff
2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string> tree | commitdiff
2006-09-07 Diane Troutgo back to using const char * in seqcomp tree | commitdiff
2006-08-30 Diane Troutuse shared_ptr to store the sequence string tree | commitdiff
2006-08-29 Diane Troutput basepair alphabets into the Sequence class tree | commitdiff
2006-08-29 Diane Troutgo back to sequence being its own class tree | commitdiff
2006-08-31 Diane Troutneed to #include <cassert> if i'm going to use asserts tree | commitdiff
2006-08-24 Diane Troutstart trying to figure out where the documentation is tree | commitdiff
2006-08-24 Diane Troutupdate sequence serialization to support the xml archive tree | commitdiff
2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence... tree | commitdiff
2006-08-22 Diane Troutcatch the other spurious class decoration tree | commitdiff
2006-08-22 Diane Troutremove unnecessary class member decoration tree | commitdiff
2006-08-12 Diane TroutFix merge issues with the win32 library patch tree | commitdiff
2006-08-12 Brandon KingReorder libraries for win32 tree | commitdiff
2006-08-12 Brandon KingTell unittests to use native file convention for EXAMPL... tree | commitdiff
2006-08-10 Diane TroutTry alpha blending the conservation paths tree | commitdiff
2006-08-10 Diane TroutLet the annotation parser skip html tags tree | commitdiff
2006-08-09 Diane TroutImplement serialize for sequence tree | commitdiff
2006-08-09 Diane Troutstart breaking save out from Mussa::analyze() tree | commitdiff
2006-08-09 Diane TroutAdd documentation about Mussa::soft_threshold tree | commitdiff
2006-08-09 Diane Troutadd dirty flag tree | commitdiff
2006-08-09 Diane Troutchange from cout to clog in some commented out debuggin... tree | commitdiff
2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget tree | commitdiff
2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BI... tree | commitdiff
2006-07-27 Diane Troutadd annot and motif classes to python interface tree | commitdiff
2006-07-21 Diane TroutBuild universal binaries on OS X tree | commitdiff
2006-07-13 Diane Troutstart the trivial sequence filter tree | commitdiff
2006-07-01 Diane TroutSequenceLocation was being intialized with left,right tree | commitdiff
2006-07-01 Diane Troutmake sure subsequences have a species name tree | commitdiff
2006-07-01 Diane TroutImplement UI for subanalysis mode tree | commitdiff
2006-06-30 Diane Troutfix boost::python sequence interface tree | commitdiff
2006-06-30 Diane Troutstore motifs as sequences instead of strings tree | commitdiff
2006-06-29 Diane Troutset_motifs should erase the previous motifs tree | commitdiff
2006-06-29 Diane Troutallow specifying a name for a sequence tree | commitdiff
2006-06-29 Diane Troutupdate the annotation grammer to make species name... tree | commitdiff
2006-06-29 Diane Troutbreak the core of add_motifs loop into a seperate function tree | commitdiff
2006-06-23 Diane TroutGetting closer to a subanalysis mode tree | commitdiff
2006-06-21 Diane TroutMore progress toward subanalysis tree | commitdiff
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MUSSA multi-species alignment tool