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rename ExtendedConservedPath for the old fltk code
2006-05-23 Diane Troutrename ExtendedConservedPath for the old fltk code
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2006-05-22 Diane Troutwe should be defaulting to qt 4.1.2
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2006-05-22 Diane Troutmake linking python optional
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2006-05-20 Diane Troutturn color back on
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2006-05-20 Diane Troutticket:62 fix local alignment
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2006-05-20 Diane Troutspecify what version of cmake is required
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2006-05-18 Diane Troutrename the python extension to _mussa.so
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2006-05-18 Diane Troutexpose more of the sequence class to python
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2006-05-17 Diane Troutfinish implementing annotation by sequence
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2006-05-17 Diane Troutswitch to a character based spirit parser
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2006-05-17 Diane Trouttry to read fasta blocks in the annotation file
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2006-05-17 Diane Troutuse spirit parser for reading annot file
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2006-05-16 Diane Troutadd annotations by sequence string
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2006-05-11 Diane Trouttry to make setup.py multiplatform
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2006-05-11 Diane Troutminor tweaks for building mussa under setup.py
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2006-05-11 Diane Troutsuper simple mussa gui driver
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2006-05-11 Diane Troutbuild all of mussagl as a python extension
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2006-05-10 Diane Troutlets try letting python build mussa
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2006-05-10 Diane Troutincrease the use of python in mussa
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2006-05-04 Diane Troutallow saving aligned window browser to image
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2006-05-04 Diane Troutshow the name of the analysis loaded
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2006-05-04 Diane Troutallow opening multiple MussaWindows
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2006-04-19 Diane Troutwin32 paths need some conversion
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2006-04-18 Diane Trouttry to get mussagl to build on win32
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2006-04-18 Diane Troutimplement commandline arguments for makedmg
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2006-04-13 Diane Troutthe fasta error message should include the filename
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2006-04-13 Diane Troutfix ticket:83 throw an error when we don't have a fasta...
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2006-04-13 Diane Troutcreate an options structure to indicate if we need...
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2006-04-12 Diane Troutticket:85 fix, extend code crashes with 1 path
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2006-04-12 Diane Troutuse a custom target for python extension
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2006-04-12 Diane Troutrecord cmake commands to deal with some dependency...
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2006-04-12 Diane Troutdefault to building a debug version
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2006-04-12 Diane Troutput qt gui launching code into a function
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2006-04-12 Diane TroutAMD64 needs -fPIC for mussa_core
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2006-04-12 Diane Troutput spaces instead of <TAB> on gui/module.mk
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2006-04-12 Diane Troutln -s is not that reliable
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2006-04-12 Diane Troutbuild the python interface
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2006-04-11 Diane Troutminor fixes for older buildsystems
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2006-04-08 Diane Troutrename _LIB to _LIBRARY to be more consistent with...
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2006-04-07 Diane Troutbuild fltk version and deal with debian qt4 weirdness
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2006-04-07 Diane Troutmake include gl.h multiplatform
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2006-04-07 Diane Troutswitch to using boost::filesystem
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2006-04-07 Diane Troutput build environment support tools in makelib
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2006-04-06 Diane Troutcmake setupfiles
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2006-04-04 Diane TroutQSplitter has rendering problems on os x
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2006-04-04 Diane Troutan int signal doesn't connect to a size_t slot
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2006-04-04 Diane Troutallow making dmgs for things other than mussa
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2006-03-30 Diane Troutallow running without using the gui
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2006-03-30 Diane Troutbetter setup dialog label names
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2006-03-29 Diane Troutkeep the sequence view at higher zoom level
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2006-03-29 Diane Troutmotifs should render on top of annotations
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2006-03-29 Diane Troutmake annotations big enough to show up
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2006-03-29 Diane TroutView sequence alignment at non default thresholds
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2006-03-29 Diane Troutchoose alignment needs to force the sequences to redraw
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2006-03-29 Diane TroutProvide a zoom widget in MussaAlignedWindow
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2006-03-29 Diane TroutMove zoom spinbox into its own widget
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2006-03-29 Diane TroutsetAlignment, as a target of a qt signal, needs to...
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2006-03-29 Diane Troutignore some generated product
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2006-03-28 Diane Troutfix more warnings
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2006-03-28 Diane Troutthreshold widget shows both base pair and percents
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2006-03-28 Diane Troutrecover threshold and window size
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2006-03-28 Diane Troutimprove os x makefiles
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2006-03-28 Diane Troutuse qt resources for icons
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2006-03-23 Diane Troutdisable coloring things with reverse compliment colors.
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2006-03-23 Diane Troutdefine an analysis should keep settings
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2006-03-23 Diane Troutchange from slider to spinner for threshold
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2006-03-23 Diane Troutbetter sidebar rendering
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2006-03-22 Diane Troutfix selection box coordinate bugs
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2006-03-22 Diane Troutspurious mouseReleaseEvent caused a crash
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2006-03-22 Diane Troutfinish dialog box to setup an analysis
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2006-03-22 Diane TroutIncrease line thickness
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2006-03-22 Diane Troutprovide more information in the about box.
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2006-03-22 Diane Troutbless osx Qt components and make a .dmg
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2006-03-21 Diane Trouttell doxygen about motif_editor and mussa_setup_dialog
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2006-03-21 Diane Troutprovide a user interface to edit motifs
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2006-03-21 Diane Troutresizing should also change the sequence position indicators
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2006-03-21 Diane Trouthopefully this fixes the off by one error
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2006-03-21 Diane Troutwhen changing alignment the position also needs to...
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2006-03-21 Diane Troutset inital left position
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2006-03-20 Diane Troutresizing increases the viewable world
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2006-03-20 Diane Troutchanging the set of links does need to redraw
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2006-03-20 Diane TroutMussa aligned sequence view seems to work
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2006-03-20 Diane Troutdont crash when loading a new analysis
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2006-03-19 Diane Troutdraw alignment lines
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2006-03-19 Diane Troutrender sequence correctly in mussa aligned window
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2006-03-19 Diane Troutimplement zoom in terms of base pairs per pixel
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2006-03-18 Diane Troutcenter on path
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2006-03-18 Diane Troutdefine window for showing a mussa alignment
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2006-03-17 Diane Troutrefactored PathScene into SequenceBrowserWidget
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2006-03-16 Diane Troutspecify where the gl.h is on a mac
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2006-03-16 Diane Troutfix motif coloring
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2006-03-16 Diane Trouttrack labels
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2006-03-16 Diane Troutre-implement selection
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2006-03-16 Diane Troutcomputation for a path segment was wrong
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2006-03-15 Diane Troutfix the scrollbar
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2006-03-15 Diane Troutmake the path view independent of type of connection
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2006-03-14 Diane Troutmake doxygen output more focused
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2006-03-14 Diane Troutload and display a motif list
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2006-03-14 Diane Troutdocument win_append, thres_append
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2006-03-14 Diane Troutjust load the sequence
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MUSSA multi-species alignment tool