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use an enum instead of a bool for strandedness
2006-09-15 Diane Troutuse an enum instead of a bool for strandedness
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2006-09-15 Diane Troutmake our Color class serializable
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2006-09-14 Diane Troutdo a better job of erasing the browser sidebars
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2006-09-14 Diane Troutmake sure we show the start of our sequence name
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2006-09-14 Diane TroutImplement an optional name in the motif parser
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2006-09-13 Diane TroutMussaSetupDialog remembers previous load directory
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2006-09-13 Diane Troutdefault saveAnalysisAs to users home directory
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2006-09-12 Diane Troutwarn the user if we're going to replace an analysis
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2006-09-12 Diane Troutimplement "typical" save and close conventions.
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2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis...
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2006-09-12 Diane Troutimplement analysis save as dialog
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2006-09-12 Diane Troutadd seq_forward
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2006-09-09 Diane Troutmake really sure load_mupa has a file to parse.
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2006-09-08 Diane Troutsubsequences now use offsets into the shared_ptr seq_string
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2006-09-08 Diane Troutcatch a few more potential unchecked shared_ptr dereferences.
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2006-09-07 Diane Troutremove commented out string conversion
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2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string>
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2006-09-07 Diane Troutgo back to using const char * in seqcomp
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2006-08-30 Diane Troutuse shared_ptr to store the sequence string
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2006-08-29 Diane Troutput basepair alphabets into the Sequence class
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2006-08-29 Diane Troutgo back to sequence being its own class
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2006-08-31 Diane TroutThere's something wrong with the Qt tests, skip for...
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2006-08-31 Diane Troutfedora needs -lutil for python to build
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2006-08-31 Diane Troutneed to #include <cassert> if i'm going to use asserts
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2006-08-29 Diane Troutforgot namespace declaration on some conditional code
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2006-08-24 Diane Troutstart trying to figure out where the documentation is
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2006-08-24 Diane Troutupdate sequence serialization to support the xml archive
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2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence...
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2006-08-22 Diane Troutcatch the other spurious class decoration
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2006-08-22 Diane Troutremove unnecessary class member decoration
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2006-08-12 Diane TroutFix merge issues with the win32 library patch
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2006-08-11 Diane TroutUpdate SequenceDescription to have signal/slots
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2006-08-11 Diane Troutdo a better job of grouping seqbrowser sidebar information.
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2006-08-10 Diane TroutTry alpha blending the conservation paths
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2006-08-10 Diane Troutremove the useless hide motif button.
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2006-08-10 Diane TroutLet the annotation parser skip html tags
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2006-08-09 Diane TroutImplement serialize for sequence
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2006-08-09 Diane Troutstart breaking save out from Mussa::analyze()
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2006-08-09 Diane TroutAdd documentation about Mussa::soft_threshold
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2006-08-09 Diane Troutremove mck3test.museq and .muway
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2006-08-09 Diane TroutAdd serialization library to FindBoost
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2006-08-09 Diane Troutadd dirty flag
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2006-08-09 Diane Troutchange from cout to clog in some commented out debugging...
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2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget
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2006-07-28 Diane Troutupdate osxdist to point to qt 4.1.4
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2006-07-28 Diane Troutfix ticket:115 display sequences in order added
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2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR
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2006-07-28 Diane TroutSince building with cmake 2.2 didn't work up the required...
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2006-07-28 Diane Troutset current doc url
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2006-07-28 Diane TroutImplement a convienence class for accessing python...
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2006-07-27 Diane Troutrename glseq.width to glseq.size in gl.py
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2006-07-27 Diane Troutupdate gl.py to show how to add an annotation
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2006-07-27 Diane Troutadd annot and motif classes to python interface
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2006-07-27 Diane Troutupdate gl.py glut example code
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2006-07-27 Diane Troutuse QT_QTASSISTANT_FOUND when detecting QtAssistant
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2006-07-27 Diane Troutfix problems instantiating mussa.GlSequence
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2006-07-27 Diane Troutmake it possible to build mussa with python
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2006-07-26 Diane TroutUse BOOST_PYTHON_LIBRARY as python library guard
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2006-07-22 Diane Troutuniversal ld wrapper script
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2006-07-21 Diane TroutBuild universal binaries on OS X
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2006-07-15 Diane TroutProvide an app icon on OS X
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2006-07-15 Diane Troutinclude images used for bioinformatics journal club...
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2006-07-13 Diane Troutstart the trivial sequence filter
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2006-07-11 Diane Troutignore another build name
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2006-07-11 Diane Troutupdate os x building tools
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2006-07-11 Diane TroutTest for RST2HTML and BOOST_PYTHON_LIB
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2006-07-11 Diane Troutfix spelling error
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2006-07-10 Diane TroutPresentation for bioinformatics club.
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2006-07-08 Diane Troutstart of presentation for bioinformatics journal club...
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2006-07-06 Diane TroutEmpty Subanalyses should not be run
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2006-07-06 Diane TroutWrite cmake scripts for building the html manual
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2006-07-05 Diane TroutSequenceLocationModel::clear should actually clear...
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2006-07-05 Diane Troutremove MotifDetail:: from function in class declaration
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2006-07-01 Diane TroutSequenceLocation was being intialized with left,right
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2006-07-01 Diane Troutmake sure subsequences have a species name
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2006-07-01 Diane Troutmake subanalysis window editable
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2006-07-01 Diane TroutImplement UI for subanalysis mode
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2006-06-30 Diane Troutfix boost::python sequence interface
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2006-06-30 Diane Troutstore motifs as sequences instead of strings
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2006-06-30 Diane TroutAllow disabling motifs
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2006-06-30 Diane Troutmove edit motifs to the edit menu option
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2006-06-29 Diane Troutset_motifs should erase the previous motifs
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2006-06-29 Diane Troutallow specifying a name for a sequence
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2006-06-29 Diane Troutupdate the annotation grammer to make species name...
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2006-06-29 Diane Troutview sequence alignment is a more biologically useful...
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2006-06-29 Diane Troutbreak the core of add_motifs loop into a seperate function
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2006-06-29 Diane TroutAllow setting a name for a motif
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2006-06-26 Diane TroutTailorization
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2006-06-23 Diane TroutGetting closer to a subanalysis mode
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2006-06-21 Diane TroutMore progress toward subanalysis
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2006-06-21 Diane Troutuse a specific exception when nextTo breaks
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2006-06-20 Diane Troutextend annotation names and types to allow punctuation
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2006-06-17 Diane Troutadd view alignment to the sequence browser context...
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2006-06-17 Diane Troutmake Sequence a subclass of std::string
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2006-06-16 Diane Troutremove unnecessary class decoration
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2006-06-16 Diane Troutticket:104 fix some pointer problems with MussaAlignedWindow
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2006-06-15 Diane Troutshare one instance of the copySelectedSequenceAsFastaAction
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2006-06-15 Diane TroutDisabled code to try and get bundle path on OS X
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2006-06-15 Diane TroutTell CMake not to include QtAssistant if not available
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2006-06-15 Diane Troutbe more informative when DISPLAY isn't set under unix
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MUSSA multi-species alignment tool