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import urljoin from six.moves.urllib.parse
[htsworkflow.git] / htsworkflow / pipelines /
2015-03-18 Diane Troutimport ConfigParser classes from six.moves.configparser tree | commitdiff
2015-02-03 Diane Troutconvert to unicode_literals tree | commitdiff
2015-02-02 Diane Trouttake advantage of absolute_import to simplify import... tree | commitdiff
2015-02-02 Diane TroutReplace elif list() > int() with else tree | commitdiff
2015-01-30 Diane TroutConvert alphanum sort from comparitor to key operator tree | commitdiff
2015-01-29 Diane Troutupdate srf2fastq detection code to work with byte arrays tree | commitdiff
2015-01-29 Diane Troutassume we are writing text with gzip tree | commitdiff
2015-01-29 Diane Troutreplace iterkeys with python 3 equivalents tree | commitdiff
2015-01-29 Diane Troutconvert has_key to X in dictionary tree | commitdiff
2015-01-29 Diane Troutuse six.moves to work around urllib / urllib2 / urlpars... tree | commitdiff
2015-01-29 Diane Troutconvert to print_function, and start adding unicode_lit... tree | commitdiff
2015-01-29 Diane Troutremove ,'s from more except blocks, and now a raise too tree | commitdiff
2015-01-29 Diane Troutmore use six.moves to import StringIO tree | commitdiff
2015-01-29 Diane Troutwhitespace-cleanup tree | commitdiff
2015-01-29 Diane Troutremove some commented out code tree | commitdiff
2015-01-29 Diane Troutconvert to print_function tree | commitdiff
2015-01-29 Diane TroutConvert old style except blocks to except Exception... tree | commitdiff
2015-01-21 Diane TroutUpdate test_retrieve_config to work with factories tree | commitdiff
2015-01-14 Diane Troutfix spelling error in module name tree | commitdiff
2014-07-24 Diane TroutFlatten project hierarchy, moving djano applications... tree | commitdiff
2014-06-19 Diane Troutremove file created by typoing file name tree | commitdiff
2014-06-19 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-19 Diane TroutExplicitly list initial_data.json for the test data... tree | commitdiff
2014-06-10 Diane TroutIndicate when desplit_fastq didn't get any files to... tree | commitdiff
2014-06-10 Diane TroutMake sure we can load a run file that lacks alignment... tree | commitdiff
2014-06-10 Diane Troutuse autoopen to access fastq files tree | commitdiff
2014-06-10 Diane TroutStart implementing tool to compute library fastq quality tree | commitdiff
2014-06-10 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2014-02-18 Diane TroutAdd option to compress fastq file tree | commitdiff
2014-01-22 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2014-01-08 Diane TroutRename stripNamespace strip_namespace tree | commitdiff
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2013-12-17 Diane Troutremove some test code debugging print statements tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... tree | commitdiff
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... tree | commitdiff
2013-12-05 Diane Troutfix typo tree | commitdiff
2013-12-05 Diane Troutfix typo tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... tree | commitdiff
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... tree | commitdiff
2013-12-02 Diane TroutCatch and report another class of exception tree | commitdiff
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutAdd command line feature to srf command tree | commitdiff
2013-10-17 Diane TroutDynamically respond to the number of lanes. tree | commitdiff
2013-07-22 Diane TroutMove version finding code into the util directory. tree | commitdiff
2013-02-01 Diane TroutMake a sample key list to go along with our lane list tree | commitdiff
2013-01-16 dianeAdd more entries to genome version detection map. tree | commitdiff
2013-01-16 Diane TroutSupport scanning HiSeq runs with multiple analyses. tree | commitdiff
2013-01-16 Diane TroutThrown an exception if we can't parse base calling... tree | commitdiff
2013-01-15 Diane TroutStart making documentation for htsworkflow. tree | commitdiff
2013-01-09 Diane TroutA better resolution to a possible circular dependency. tree | commitdiff
2013-01-08 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-01-08 Diane TroutTry to make Aligned result directories optional in... tree | commitdiff
2013-01-08 Diane TroutAdd unaligned stats files to hiseq test case tree | commitdiff
2013-01-08 Diane TroutTweak timestamp format. tree | commitdiff
2012-12-14 Diane TroutGerald's time-stamp format was inconsistent. tree | commitdiff
2012-12-13 Diane TroutUse specific time formatting instead of locale '%c' tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-16 Diane TroutFurther attempts to validate RDF models. tree | commitdiff
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutProgress using rdf model to link fastqs with flowcell... tree | commitdiff
2012-08-31 Diane TroutOlder rdf library doesn't like unicode strings as nodes tree | commitdiff
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-06 Diane TroutTest proper setting of sequence project variable tree | commitdiff
2012-08-02 Diane TroutTest more of the sequences class. tree | commitdiff
2012-07-25 Diane TroutActually we want to capture the unanalyzed lanes if... tree | commitdiff
2012-07-19 Diane TroutAdapt building qseq or srf archives to use SampleKey... tree | commitdiff
2012-07-19 Diane TroutUpdate save_raw_data to SampleKey api tree | commitdiff
2012-07-19 Diane TroutAdd in a few more genomes to detection code tree | commitdiff
2012-07-16 Diane TroutRemove default sequence-format so the new auto-detector... tree | commitdiff
2012-07-14 Diane TroutAttempt to guess raw sequence type for a run. tree | commitdiff
2012-07-13 Diane TroutFix a refactoring error tree | commitdiff
2012-07-12 Diane TroutLook for RTAConfig.xml file generated by pipeline 1... tree | commitdiff
2012-07-12 Diane TroutUse lane 1s matrix when pipeline was set to build matri... tree | commitdiff
2012-07-12 Diane TroutClean up flowcell ID detection and add support for... tree | commitdiff
2012-07-12 Diane TroutRe-enable some suppressed tests and update them for... tree | commitdiff
2012-07-12 Diane Troutwhitespace fix. tree | commitdiff
2012-07-11 Diane TroutTest reading the xml out of a file too. tree | commitdiff
2012-07-10 Diane TroutFix import statement and typos for genomemap tree | commitdiff
2012-07-10 Diane TroutCreate a class to convert contig names into genome... tree | commitdiff
2012-07-10 Diane TroutGuess genome name for building compressed mapping count... tree | commitdiff
2012-07-07 Diane TroutUse sample keys when looking up lane parameters. tree | commitdiff
2012-07-06 Diane TroutA few python 2.6 test case incompatibilities. tree | commitdiff
2012-07-06 Diane TroutSwitch to regular dictionary instead of ordered dictionary. tree | commitdiff
2012-07-05 Diane TroutMassively rework eland file finding and indexing. tree | commitdiff
2012-07-05 Diane TroutRename chromosome in hiseq test set to match our fake... tree | commitdiff
2012-06-30 Diane TroutDisable debug messages for each scanned eland file... tree | commitdiff
2012-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
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htsworkflow sequencing LIMS software