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[htsworkflow.git] / htswanalysis /
2009-06-26 Rami Rauch(no commit message) tree | commitdiff
2009-04-23 Tim Reddy Timpatched to handle new pf file format with generality... tree | commitdiff
2009-02-23 Tim Reddy TimSmall bug fix tree | commitdiff
2009-01-12 Tim Reddy TimAdded file to flatten fasta as prep for bioprospector tree | commitdiff
2009-01-05 Tim Reddy TimChange over from wiggle files to bedgraph files to... tree | commitdiff
2009-01-04 Tim Reddy TimAdded new profile program to make a bedgraph file.... tree | commitdiff
2009-01-03 Tim Reddy TimAdded new program to profile reads using bedgraph forma... tree | commitdiff
2008-12-24 Tim Reddy TimInitial check in of c++ short read programming library... tree | commitdiff
2008-12-24 Tim Reddy TimBugfixes tree | commitdiff
2008-12-23 Tim Reddy TimWorking on a bug fix... tree | commitdiff
2008-12-23 Tim Reddy TimAdded code to identify snps and update the gneome accor... tree | commitdiff
2008-12-16 Tim Reddy TimForgot to add count_reads.pm script tree | commitdiff
2008-12-16 Tim Reddy TimUpdated read counts to give information about aligment... tree | commitdiff
2008-12-12 Tim Reddy TimSmall edits to make code nicer. tree | commitdiff
2008-12-12 Tim Reddy TimInitial checkin of code to evaluate known snps from... tree | commitdiff
2008-12-12 Tim Reddy TimFinal installation of methylseq analysis. tree | commitdiff
2008-12-12 Tim Reddy Tim(no commit message) tree | commitdiff
2008-12-08 Tim Reddy TimAdded hg18 known genes file from ucsc tree | commitdiff
2008-12-08 Tim Reddy TimBug fixes to bring up methylseq analysis Tasks tree | commitdiff
2008-12-08 Tim Reddy TimAdded framework for methylseq analysis. tree | commitdiff
2008-12-03 Tim Reddy TimBug-fixes in sequence repository code and projects... tree | commitdiff
2008-11-25 Tim Reddy Timminor typo. tree | commitdiff
2008-11-25 Tim Reddy TimSmall change to handle the odd case when no alignment... tree | commitdiff
2008-11-25 Tim Reddy TimMinor typeo fix tree | commitdiff
2008-11-25 Tim Reddy TimRe-factored the repository to automatically calculate... tree | commitdiff
2008-11-25 Tim Reddy TimMajor analysis server update. Had to switch to a new... tree | commitdiff
2008-11-25 Tim Reddy TimAdded script front-end for primer-design code tree | commitdiff
2008-11-25 Tim Reddy TimAdded qPCR Validation design code tree | commitdiff
2008-11-24 Tim Reddy TimAdd validation primer code to MACS source tree | commitdiff
2008-11-24 Tim Reddy TimMoving QC functionalty into repository so we can run... tree | commitdiff
2008-11-24 Tim Reddy TimRemoved from hard-coded directories. Starting to bring... tree | commitdiff
2008-11-24 Tim Reddy TimChanges the install line to be a copy instead of a... tree | commitdiff
2008-11-19 Rami Rauchconverts the HTSW align format (derived from Eland... tree | commitdiff
2008-11-19 Rami Rauchadded: if peak score < zero put zero tree | commitdiff
2008-10-08 Rami Rauchadded updLibInfo function tree | commitdiff
2008-10-08 Rami Rauchadded case for calling updLibInfo tree | commitdiff
2008-09-22 Rami Rauchconverts QuEST peakcalls output file into narrowPeak... tree | commitdiff
2008-09-03 Tim Reddy TimUpdates to profile reads to be more general in how... tree | commitdiff
2008-08-30 Tim Reddy TimAdded installation notes tree | commitdiff
2008-08-29 Tim Reddy TimAdded MACS source tree | commitdiff
2008-08-29 Tim Reddy TimMinor typos fixes tree | commitdiff
2008-08-28 Tim Reddy TimFirst complete Projects/Tasks build. tree | commitdiff
2008-08-28 Tim Reddy TimAdded a program to help compare libraries tree | commitdiff
2008-08-21 Tim Reddy TimTasks functionality added. Lots of cleanup to do, but... tree | commitdiff
2008-08-20 Tim Reddy TimAdded align_to_bed script. Used to turn MACS output... tree | commitdiff
2008-08-20 Tim Reddy TimAdded wiggle fiole generation tree | commitdiff
2008-08-20 Tim Reddy TimQuest_2_bed conversaion added. tree | commitdiff
2008-08-19 Tim Reddy TimAdded auxillliary programs needed to run projects tree | commitdiff
2008-08-19 Tim Reddy TimSmalle bug fix tree | commitdiff
2008-08-19 Tim Reddy Timadded comm module of communication. tree | commitdiff
2008-08-19 Tim Reddy TimAdded communitaion between projects and lims tree | commitdiff
2008-08-19 Tim Reddy TimInitial attempt to get Projects and Tasks framework... tree | commitdiff
2008-08-18 Tim Reddy TimMajor bug-fix where some probes in the in-silico qPCR... tree | commitdiff
2008-08-18 Tim Reddy TimSmall change to fix directory structure problem tree | commitdiff
2008-08-14 Tim Reddy TimFixed another directory problem: the libraries repo... tree | commitdiff
2008-08-14 Tim Reddy TimFixed directories to be more general and easy to set... tree | commitdiff
2008-08-14 Tim Reddy TimFixed bug that bailed on empty alignment files. (weird... tree | commitdiff
2008-08-14 Tim Reddy TimTook our some old targets from the Makefile that are... tree | commitdiff
2008-08-14 Tim Reddy TimMade changes to add quarterly information to the sequen... tree | commitdiff
2008-08-13 Tim Reddy TimBig steps on getting the library automation going.... tree | commitdiff
2008-08-09 Unknown AuthorFinished adding LibraryMakefile related code. Nothing... tree | commitdiff
2008-08-08 Unknown AuthorInitial Checkin. Not complete package yet, but a starti... tree | commitdiff
2008-08-08 Unknown AuthorInitial Checkin tree | commitdiff
2008-08-05 Brandon KingFirst attempt at breaking up code into seperately insta... tree | commitdiff
htsworkflow sequencing LIMS software