| 2012-06-14 |
Diane Trout | Slightly different sort order for finding libraries
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| 2012-06-12 |
Diane Trout | Add a software (name) property to firecrest, ipar,...
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commit | commitdiff | tree |
| 2012-06-11 |
Diane Trout | Return a gerald version number as a number and not...
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commit | commitdiff | tree |
| 2012-06-07 |
Diane Trout | Add instrument ID and model to sequencer table
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commit | commitdiff | tree |
| 2012-06-02 |
Diane Trout | Split lane parameters into seperate classes for GA...
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commit | commitdiff | tree |
| 2012-05-31 |
Diane Trout | Fixup docstring to be clearer to others
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commit | commitdiff | tree |
| 2012-05-25 |
Diane Trout | Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htsworkflow
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commit | commitdiff | tree |
| 2012-05-25 |
Diane Trout | replace tab charcter with spaces in the multiplex index...
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commit | commitdiff | tree |
| 2012-05-25 |
Diane Trout | Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htsworkflow
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commit | commitdiff | tree |
| 2012-05-25 |
Diane Trout | Fix Multiplex index pluralization
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commit | commitdiff | tree |
| 2012-05-23 |
Diane Trout | Generate html reports when doing sparql queries with...
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commit | commitdiff | tree |
| 2012-05-16 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commit | commitdiff | tree |
| 2012-05-16 |
Diane Trout | Tweak some test code to work with librdf 1.0.10
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commit | commitdiff | tree |
| 2012-05-16 |
Diane Trout | update summary.py to extract data from HiSeq runs.
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commit | commitdiff | tree |
| 2012-05-15 |
Diane Trout | Fix bugs introduduced by the improved HiSeq runfolder...
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commit | commitdiff | tree |
| 2012-05-12 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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| 2012-05-12 |
Diane Trout | I found this version more useful for trying to
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commit | commitdiff | tree |
| 2012-05-12 |
Diane Trout | Properly constructing the geo soft file really needed...
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commit | commitdiff | tree |
| 2012-05-12 |
Diane Trout | Prepare for submitting data to geo by:
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commit | commitdiff | tree |
| 2012-05-10 |
Diane Trout | Minimal changes needed to get raw data archived for...
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commit | commitdiff | tree |
| 2012-05-04 |
Diane Trout | 100% test coverage for alphanum.py
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commit | commitdiff | tree |
| 2012-05-03 |
Diane Trout | Rename a cell-line since we're now using "treatment...
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commit | commitdiff | tree |
| 2012-04-17 |
Diane Trout | Add ability to override location to tar and lftp commands
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commit | commitdiff | tree |
| 2012-04-17 |
Diane Trout | Rename global logger to LOGGER to be more PEP8 like
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commit | commitdiff | tree |
| 2012-04-16 |
Diane Trout | Fix a typo and a missing .items() from the change of...
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commit | commitdiff | tree |
| 2012-04-13 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commit | commitdiff | tree |
| 2012-04-12 |
Diane Trout | Extend the adapter id field to support the dual indexed...
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commit | commitdiff | tree |
| 2012-04-11 |
Diane Trout | Start developing GEO SOFT submission tool.
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commit | commitdiff | tree |
| 2012-04-11 |
Diane Trout | Move code out of ucsc_gather and into the htsworkflow...
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commit | commitdiff | tree |
| 2012-04-02 |
Diane Trout | Remove a dead form
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commit | commitdiff | tree |
| 2012-03-29 |
Diane Trout | Change to using django templates for generating condor...
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commit | commitdiff | tree |
| 2012-03-29 |
Diane Trout | Improve a settings error message, as it was confusing...
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commit | commitdiff | tree |
| 2012-03-27 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commit | commitdiff | tree |
| 2012-03-27 |
Diane Trout | Add an option to make a mini archive containing just...
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commit | commitdiff | tree |
| 2012-03-26 |
Diane Trout | Switch to lxml for parsing the summary file.
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commit | commitdiff | tree |
| 2012-03-26 |
Diane Trout | Remove a function from the inifile version of ucsc_gather
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commit | commitdiff | tree |
| 2012-03-23 |
Diane Trout | Apparently I forgot to remove a parameter why creating...
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commit | commitdiff | tree |
| 2012-03-23 |
Diane Trout | Add fastq to the raw format add_xoption
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commit | commitdiff | tree |
| 2012-03-23 |
Diane Trout | Add a rdf type for ucsc track records
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commit | commitdiff | tree |
| 2012-03-22 |
Diane Trout | Messed up the RDFa for specifying that a library was...
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commit | commitdiff | tree |
| 2012-03-08 |
Diane Trout | Actually if I provide an output file, I want to write...
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commit | commitdiff | tree |
| 2012-03-08 |
Diane Trout | Change name of term used for conditions to condition_term
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commit | commitdiff | tree |
| 2012-03-07 |
Diane Trout | Update archive script to try and deal with HiSeq multiplexed...
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commit | commitdiff | tree |
| 2012-03-07 |
Diane Trout | Always include the python path when generating the...
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commit | commitdiff | tree |
| 2012-03-07 |
Diane Trout | Forgot to add split attribute to __eq__ test.
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commit | commitdiff | tree |
| 2012-03-07 |
Diane Trout | Add extract HiSeq project based split fastq files to...
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commit | commitdiff | tree |
| 2012-03-07 |
Diane Trout | Update help message since we have a new type of file...
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commit | commitdiff | tree |
| 2012-03-06 |
Diane Trout | Support scanning for split fastq files generated by...
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commit | commitdiff | tree |
| 2012-03-06 |
Diane Trout | Ignore some more coverage files
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commit | commitdiff | tree |
| 2012-03-06 |
Diane Trout | Add module to convert multiple fastq files into a single...
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commit | commitdiff | tree |
| 2012-03-06 |
Diane Trout | Add ability to print out json structures returned by...
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commit | commitdiff | tree |
| 2012-03-05 |
Diane Trout | Use named tuple for sequence flowcell/start/stop/project...
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commit | commitdiff | tree |
| 2012-03-02 |
Diane Trout | Core functions for saving and finding fastq files generated...
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commit | commitdiff | tree |
| 2012-03-01 |
Diane Trout | Remove some debug prints
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commit | commitdiff | tree |
| 2012-03-01 |
Diane Trout | Simulate a HiSeq runfolder.
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commit | commitdiff | tree |
| 2012-02-02 |
Diane Trout | Make report prettier.
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commit | commitdiff | tree |
| 2012-01-31 |
Diane Trout | Shorten option for specifying model name.
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commit | commitdiff | tree |
| 2012-01-30 |
Diane Trout | Fix a typo in some RDF example data
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commit | commitdiff | tree |
| 2012-01-30 |
Diane Trout | Make it possible to filter which genome to run report...
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commit | commitdiff | tree |
| 2012-01-30 |
Diane Trout | Add ability to refresh library data from our htsw server
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commit | commitdiff | tree |
| 2012-01-25 |
Diane Trout | Start writing a report for "so, what experiments have...
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commit | commitdiff | tree |
| 2012-01-25 |
Diane Trout | Added scanning for libraries that aren't attached to...
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commit | commitdiff | tree |
| 2012-01-25 |
Diane Trout | split a function into two. (A query execute function...
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commit | commitdiff | tree |
| 2012-01-25 |
Diane Trout | Changed pprint daf attributes to a pformat output via...
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commit | commitdiff | tree |
| 2012-01-25 |
Diane Trout | Fix 'typo' in a library URN.
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commit | commitdiff | tree |
| 2012-01-23 |
Diane Trout | Don't use assertIn as older ubuntu python doesn't have it
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commit | commitdiff | tree |
| 2012-01-23 |
Diane Trout | Invalid library IDs should 404, not return a useless...
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Handle dateTime timestamps in RDF.Nodes
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | whitespace reformatting
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Move ucsc_encode_submission code out of extra so nose...
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Remove eXecute bit from modules
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Include the test data for testing importing ucsc download...
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Add in test code for testing downloading the ucsc download...
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Deleted obsolete tests
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commit | commitdiff | tree |
| 2011-12-20 |
Diane Trout | Try to figure out where UCSC is hosting our submitted...
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commit | commitdiff | tree |
| 2011-11-22 |
Diane Trout | Add a method to override command used to convert srf...
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commit | commitdiff | tree |
| 2011-11-07 |
Diane Trout | Use Node.uri instead of manually trimming off RDF.Node...
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commit | commitdiff | tree |
| 2011-11-07 |
Diane Trout | Function generating index text was assuming there'd...
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commit | commitdiff | tree |
| 2011-11-07 |
Diane Trout | Update library adapter type initial data to match loriens...
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commit | commitdiff | tree |
| 2011-11-07 |
Diane Trout | Merge in removal of queuecommand sleep.
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commit | commitdiff | tree |
| 2011-11-05 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commit | commitdiff | tree |
| 2011-11-04 |
Diane Trout | Use a logger initialized to the module name much more...
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commit | commitdiff | tree |
| 2011-11-04 |
Diane Trout | Lorian renamed some of the libraries, change our hard...
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commit | commitdiff | tree |
| 2011-10-21 |
Diane Trout | Yes generate regular gerald config file.
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commit | commitdiff | tree |
| 2011-10-18 |
Diane Trout | Add library adapter type to filter choices,
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commit | commitdiff | tree |
| 2011-10-13 |
Diane Trout | Allow replicates 5 & 6
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commit | commitdiff | tree |
| 2011-10-11 |
Diane Trout | Use "not run" instead of todo to describe libraries...
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commit | commitdiff | tree |
| 2011-10-11 |
Diane Trout | Add a todo view that shows only libraries that have no
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commit | commitdiff | tree |
| 2011-10-10 |
Diane Trout | Remove ReadPrep and Thumbnail_Images being generated...
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commit | commitdiff | tree |
| 2011-10-10 |
Diane Trout | Don't need to duplicate %t tile in srf command
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commit | commitdiff | tree |
| 2011-10-06 |
Diane Trout | Add the ability to specify a flowcell id instead of...
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commit | commitdiff | tree |
| 2011-10-04 |
Diane Trout | Add support for flowcells analyzed with Casava 1.7
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commit | commitdiff | tree |
| 2011-09-30 |
Diane Trout | Sparql query to back create protocol & treatment from...
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commit | commitdiff | tree |
| 2011-09-30 |
Diane Trout | find submissions, even those without a set creation...
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commit | commitdiff | tree |
| 2011-09-30 |
Diane Trout | store md5sum of daf files to group different submissions
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commit | commitdiff | tree |
| 2011-09-30 |
Diane Trout | Configure daf variables in only one place. (daf.py)
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commit | commitdiff | tree |
| 2011-09-30 |
Diane Trout | Add support for new "extraVariables" term in DAF.
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commit | commitdiff | tree |
| 2011-09-22 |
Diane Trout | Mark library & flowcell as a type in RDF.
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commit | commitdiff | tree |
| 2011-09-21 |
Diane Trout | Switch from beautifulsoup to lxml, now that I know...
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