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(no commit message)
2009-04-23
Tim Reddy Tim
patched to handle new pf file format with generality...
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2009-02-23
Tim Reddy Tim
Small bug fix
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2009-01-12
Tim Reddy Tim
Added file to flatten fasta as prep for bioprospector
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2009-01-05
Tim Reddy Tim
Change over from wiggle files to bedgraph files to...
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2009-01-04
Tim Reddy Tim
Added new profile program to make a bedgraph file....
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2009-01-03
Tim Reddy Tim
Added new program to profile reads using bedgraph format...
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2008-12-24
Tim Reddy Tim
Initial check in of c++ short read programming library...
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2008-12-24
Tim Reddy Tim
Bugfixes
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2008-12-23
Tim Reddy Tim
Working on a bug fix...
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2008-12-23
Tim Reddy Tim
Added code to identify snps and update the gneome accordingl...
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2008-12-16
Tim Reddy Tim
Forgot to add count_reads.pm script
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2008-12-16
Tim Reddy Tim
Updated read counts to give information about aligment...
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2008-12-12
Tim Reddy Tim
Small edits to make code nicer.
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2008-12-12
Tim Reddy Tim
Initial checkin of code to evaluate known snps from...
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2008-12-12
Tim Reddy Tim
Final installation of methylseq analysis.
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2008-12-12
Tim Reddy Tim
(no commit message)
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2008-12-08
Tim Reddy Tim
Added hg18 known genes file from ucsc
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2008-12-08
Tim Reddy Tim
Bug fixes to bring up methylseq analysis Tasks
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2008-12-08
Tim Reddy Tim
Added framework for methylseq analysis.
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2008-12-03
Tim Reddy Tim
Bug-fixes in sequence repository code and projects...
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2008-11-25
Tim Reddy Tim
minor typo.
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2008-11-25
Tim Reddy Tim
Small change to handle the odd case when no alignment...
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2008-11-25
Tim Reddy Tim
Minor typeo fix
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2008-11-25
Tim Reddy Tim
Re-factored the repository to automatically calculate...
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2008-11-25
Tim Reddy Tim
Major analysis server update. Had to switch to a new...
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2008-11-25
Tim Reddy Tim
Added script front-end for primer-design code
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2008-11-25
Tim Reddy Tim
Added qPCR Validation design code
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2008-11-24
Tim Reddy Tim
Add validation primer code to MACS source
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2008-11-24
Tim Reddy Tim
Moving QC functionalty into repository so we can run...
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2008-11-24
Tim Reddy Tim
Removed from hard-coded directories. Starting to bring...
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2008-11-24
Tim Reddy Tim
Changes the install line to be a copy instead of a...
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2008-09-03
Tim Reddy Tim
Updates to profile reads to be more general in how...
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2008-08-30
Tim Reddy Tim
Added installation notes
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2008-08-29
Tim Reddy Tim
Added MACS source
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2008-08-29
Tim Reddy Tim
Minor typos fixes
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2008-08-28
Tim Reddy Tim
First complete Projects/Tasks build.
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2008-08-28
Tim Reddy Tim
Added a program to help compare libraries
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2008-08-21
Tim Reddy Tim
Tasks functionality added. Lots of cleanup to do, but...
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2008-08-20
Tim Reddy Tim
Added align_to_bed script. Used to turn MACS output...
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2008-08-20
Tim Reddy Tim
Added wiggle fiole generation
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2008-08-20
Tim Reddy Tim
Quest_2_bed conversaion added.
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2008-08-19
Tim Reddy Tim
Added auxillliary programs needed to run projects
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2008-08-19
Tim Reddy Tim
Smalle bug fix
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2008-08-19
Tim Reddy Tim
added comm module of communication.
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2008-08-19
Tim Reddy Tim
Added communitaion between projects and lims
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2008-08-19
Tim Reddy Tim
Initial attempt to get Projects and Tasks framework...
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2008-08-18
Tim Reddy Tim
Major bug-fix where some probes in the in-silico qPCR...
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2008-08-18
Tim Reddy Tim
Small change to fix directory structure problem
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2008-08-14
Tim Reddy Tim
Fixed another directory problem: the libraries repo...
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2008-08-14
Tim Reddy Tim
Fixed directories to be more general and easy to set...
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2008-08-14
Tim Reddy Tim
Fixed bug that bailed on empty alignment files. (weird...
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2008-08-14
Tim Reddy Tim
Took our some old targets from the Makefile that are...
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2008-08-14
Tim Reddy Tim
Made changes to add quarterly information to the sequencign...
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2008-08-13
Tim Reddy Tim
Big steps on getting the library automation going....
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