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htsworkflow.git
2009-01-16
Rami Rauch
trying to integrate a django admin template with this...
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2009-01-16
Rami Rauch
(no commit message)
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2009-01-16
Rami Rauch
adjusted Projects XML schema to add new CALC type
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2009-01-16
Rami Rauch
added some help text near the text boxes and added...
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2009-01-16
Rami Rauch
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2009-01-16
Rami Rauch
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2009-01-16
Rami Rauch
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2009-01-16
Rami Rauch
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2009-01-16
Rami Rauch
some minot changes
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2009-01-12
Tim Reddy Tim
Added file to flatten fasta as prep for bioprospector
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2009-01-05
Tim Reddy Tim
Change over from wiggle files to bedgraph files to...
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2009-01-04
Tim Reddy Tim
Added new profile program to make a bedgraph file....
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2009-01-03
Tim Reddy Tim
Added new program to profile reads using bedgraph forma...
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2008-12-24
Tim Reddy Tim
Initial check in of c++ short read programming library...
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2008-12-24
Tim Reddy Tim
Bugfixes
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2008-12-23
Tim Reddy Tim
Working on a bug fix...
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2008-12-23
Tim Reddy Tim
Added code to identify snps and update the gneome accor...
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2008-12-16
Tim Reddy Tim
Forgot to add count_reads.pm script
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2008-12-16
Tim Reddy Tim
Updated read counts to give information about aligment...
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2008-12-12
Tim Reddy Tim
Small edits to make code nicer.
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2008-12-12
Tim Reddy Tim
Initial checkin of code to evaluate known snps from...
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2008-12-12
Tim Reddy Tim
Final installation of methylseq analysis.
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2008-12-12
Tim Reddy Tim
(no commit message)
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2008-12-08
Tim Reddy Tim
Added hg18 known genes file from ucsc
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2008-12-08
Tim Reddy Tim
Bug fixes to bring up methylseq analysis Tasks
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2008-12-08
Tim Reddy Tim
Added framework for methylseq analysis.
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2008-12-03
Tim Reddy Tim
Bug-fixes in sequence repository code and projects...
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2008-12-02
Rami Rauch
added checking on parser Status check: if !='OK' print...
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2008-12-02
Rami Rauch
added checking on parser Status check: if !='OK' print...
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2008-12-02
Rami Rauch
added exception catching to the parser and a simple...
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2008-12-01
Rami Rauch
changed Tasks&Projects Server to illumin-mac.stanford...
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2008-11-25
Tim Reddy Tim
minor typo.
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2008-11-25
Tim Reddy Tim
Small change to handle the odd case when no alignment...
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2008-11-25
Tim Reddy Tim
Minor typeo fix
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2008-11-25
Tim Reddy Tim
Re-factored the repository to automatically calculate...
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2008-11-25
Tim Reddy Tim
Major analysis server update. Had to switch to a new...
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2008-11-25
Tim Reddy Tim
Added script front-end for primer-design code
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2008-11-25
Tim Reddy Tim
Added qPCR Validation design code
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2008-11-24
Tim Reddy Tim
Add validation primer code to MACS source
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2008-11-24
Tim Reddy Tim
Moving QC functionalty into repository so we can run...
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2008-11-24
Tim Reddy Tim
Removed from hard-coded directories. Starting to bring...
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2008-11-24
Tim Reddy Tim
Changes the install line to be a copy instead of a...
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2008-11-19
Rami Rauch
converts the HTSW align format (derived from Eland...
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2008-11-19
Rami Rauch
added: if peak score < zero put zero
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2008-11-07
Rami Rauch
Progress Reports Generator
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2008-11-07
Rami Rauch
(no commit message)
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2008-10-08
Rami Rauch
Added a LibInfo folder
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2008-10-08
Rami Rauch
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2008-10-08
Rami Rauch
added updLibInfo function
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2008-10-08
Rami Rauch
added case for calling updLibInfo
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2008-10-07
Diane Trout
update imports for runfolder and eland_makebed for...
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2008-10-07
Rami Rauch
Added a display column (not DB) to show the total count...
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2008-10-07
Diane Trout
I moved more of options in settings.py to the .htsworkf...
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2008-10-07
Diane Trout
I modified the admin base site login page slightly...
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2008-09-30
Diane Trout
update imports in srf for htsw directory structure
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2008-09-30
Diane Trout
Pull tool to make srf files from trunk (depends on
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2008-09-30
Diane Trout
solexa2srf likes to produce output, so my trick of...
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2008-09-30
Diane Trout
add setuptools setup.py scripts for the modules I need...
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2008-09-22
Rami Rauch
converts QuEST peakcalls output file into narrowPeak...
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2008-09-08
Rami Rauch
Removed all Antibody related fields from the Library...
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2008-09-04
Rami Rauch
removed affiliation field from the search_fields option
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2008-09-04
Rami Rauch
(no commit message)
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2008-09-04
Rami Rauch
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2008-09-03
Tim Reddy Tim
Updates to profile reads to be more general in how...
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2008-08-30
Tim Reddy Tim
Added installation notes
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2008-08-29
Tim Reddy Tim
Added MACS source
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2008-08-29
Diane Trout
Change the django settings.py file to get configuration...
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2008-08-29
Tim Reddy Tim
Minor typos fixes
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2008-08-29
Diane Trout
Merge in all of my testing code from trunk.
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2008-08-29
Diane Trout
merge in my changes from trunk
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2008-08-29
Brandon King
Template loading fix.
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2008-08-29
Diane Trout
Ignore *.py[co~] files
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2008-08-29
Diane Trout
return the project xml config file as text/plain so...
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2008-08-29
Diane Trout
update the url matching to provide proper access to the
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2008-08-28
Tim Reddy Tim
First complete Projects/Tasks build.
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2008-08-28
Diane Trout
Actually the an_urls.py was importing the views, if...
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2008-08-28
Diane Trout
Add queuecommand to htswcommon,
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2008-08-28
Rami Rauch
cleaned the code a bit: put the method in utils.py
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2008-08-28
Rami Rauch
removed views url
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2008-08-28
Rami Rauch
(no commit message)
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2008-08-28
Diane Trout
Django really wanted a view in analys_track, it was...
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2008-08-28
Tim Reddy Tim
Added a program to help compare libraries
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2008-08-28
Rami Rauch
added Affiliation FK to Libarary + Affiliation table...
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2008-08-28
Brandon King
I think this was missing... manage.py is fairly useful...
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2008-08-25
Rami Rauch
added Affiliation table and linked to Library in a...
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2008-08-21
Rami Rauch
small GUI change
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2008-08-21
Tim Reddy Tim
Tasks functionality added. Lots of cleanup to do, but...
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2008-08-20
Tim Reddy Tim
Added align_to_bed script. Used to turn MACS output...
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2008-08-20
Rami Rauch
(no commit message)
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2008-08-20
Rami Rauch
(no commit message)
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2008-08-20
Tim Reddy Tim
Added wiggle fiole generation
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2008-08-20
Rami Rauch
minor updates
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2008-08-20
Rami Rauch
minor url updates
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2008-08-20
Rami Rauch
the only used function here is makeFCSheet. the other...
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2008-08-20
Rami Rauch
minor adjastments
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2008-08-20
Rami Rauch
added Replicate filed in Library table. added as well...
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2008-08-20
Tim Reddy Tim
Quest_2_bed conversaion added.
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2008-08-19
Tim Reddy Tim
Added auxillliary programs needed to run projects
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2008-08-19
Tim Reddy Tim
Smalle bug fix
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2008-08-19
Tim Reddy Tim
added comm module of communication.
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