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htsworkflow.git
2008-12-01
Rami Rauch
changed Tasks&Projects Server to illumin-mac.stanford...
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2008-11-25
Tim Reddy Tim
minor typo.
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2008-11-25
Tim Reddy Tim
Small change to handle the odd case when no alignment...
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2008-11-25
Tim Reddy Tim
Minor typeo fix
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2008-11-25
Tim Reddy Tim
Re-factored the repository to automatically calculate...
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2008-11-25
Tim Reddy Tim
Major analysis server update. Had to switch to a new...
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2008-11-25
Tim Reddy Tim
Added script front-end for primer-design code
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2008-11-25
Tim Reddy Tim
Added qPCR Validation design code
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2008-11-24
Tim Reddy Tim
Add validation primer code to MACS source
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2008-11-24
Tim Reddy Tim
Moving QC functionalty into repository so we can run...
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2008-11-24
Tim Reddy Tim
Removed from hard-coded directories. Starting to bring...
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2008-11-24
Tim Reddy Tim
Changes the install line to be a copy instead of a...
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2008-11-19
Rami Rauch
converts the HTSW align format (derived from Eland...
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2008-11-19
Rami Rauch
added: if peak score < zero put zero
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2008-11-07
Rami Rauch
Progress Reports Generator
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2008-11-07
Rami Rauch
(no commit message)
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2008-10-08
Rami Rauch
Added a LibInfo folder
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2008-10-08
Rami Rauch
(no commit message)
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2008-10-08
Rami Rauch
added updLibInfo function
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2008-10-08
Rami Rauch
added case for calling updLibInfo
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2008-10-07
Diane Trout
update imports for runfolder and eland_makebed for...
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2008-10-07
Rami Rauch
Added a display column (not DB) to show the total count...
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2008-10-07
Diane Trout
I moved more of options in settings.py to the .htsworkf...
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2008-10-07
Diane Trout
I modified the admin base site login page slightly...
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2008-09-30
Diane Trout
update imports in srf for htsw directory structure
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2008-09-30
Diane Trout
Pull tool to make srf files from trunk (depends on
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2008-09-30
Diane Trout
solexa2srf likes to produce output, so my trick of...
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2008-09-30
Diane Trout
add setuptools setup.py scripts for the modules I need...
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2008-09-22
Rami Rauch
converts QuEST peakcalls output file into narrowPeak...
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2008-09-08
Rami Rauch
Removed all Antibody related fields from the Library...
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2008-09-04
Rami Rauch
removed affiliation field from the search_fields option
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2008-09-04
Rami Rauch
(no commit message)
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2008-09-04
Rami Rauch
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2008-09-03
Tim Reddy Tim
Updates to profile reads to be more general in how...
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2008-08-30
Tim Reddy Tim
Added installation notes
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2008-08-29
Tim Reddy Tim
Added MACS source
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2008-08-29
Diane Trout
Change the django settings.py file to get configuration...
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2008-08-29
Tim Reddy Tim
Minor typos fixes
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2008-08-29
Diane Trout
Merge in all of my testing code from trunk.
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2008-08-29
Diane Trout
merge in my changes from trunk
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2008-08-29
Brandon King
Template loading fix.
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2008-08-29
Diane Trout
Ignore *.py[co~] files
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2008-08-29
Diane Trout
return the project xml config file as text/plain so...
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2008-08-29
Diane Trout
update the url matching to provide proper access to the
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2008-08-28
Tim Reddy Tim
First complete Projects/Tasks build.
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2008-08-28
Diane Trout
Actually the an_urls.py was importing the views, if...
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2008-08-28
Diane Trout
Add queuecommand to htswcommon,
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2008-08-28
Rami Rauch
cleaned the code a bit: put the method in utils.py
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2008-08-28
Rami Rauch
removed views url
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2008-08-28
Rami Rauch
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2008-08-28
Diane Trout
Django really wanted a view in analys_track, it was...
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2008-08-28
Tim Reddy Tim
Added a program to help compare libraries
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2008-08-28
Rami Rauch
added Affiliation FK to Libarary + Affiliation table...
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2008-08-28
Brandon King
I think this was missing... manage.py is fairly useful...
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2008-08-25
Rami Rauch
added Affiliation table and linked to Library in a...
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2008-08-21
Rami Rauch
small GUI change
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2008-08-21
Tim Reddy Tim
Tasks functionality added. Lots of cleanup to do, but...
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2008-08-20
Tim Reddy Tim
Added align_to_bed script. Used to turn MACS output...
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2008-08-20
Rami Rauch
(no commit message)
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2008-08-20
Rami Rauch
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2008-08-20
Tim Reddy Tim
Added wiggle fiole generation
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2008-08-20
Rami Rauch
minor updates
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2008-08-20
Rami Rauch
minor url updates
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2008-08-20
Rami Rauch
the only used function here is makeFCSheet. the other...
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2008-08-20
Rami Rauch
minor adjastments
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2008-08-20
Rami Rauch
added Replicate filed in Library table. added as well...
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2008-08-20
Tim Reddy Tim
Quest_2_bed conversaion added.
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2008-08-19
Tim Reddy Tim
Added auxillliary programs needed to run projects
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2008-08-19
Tim Reddy Tim
Smalle bug fix
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2008-08-19
Tim Reddy Tim
added comm module of communication.
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2008-08-19
Tim Reddy Tim
Added communitaion between projects and lims
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2008-08-19
Tim Reddy Tim
Initial attempt to get Projects and Tasks framework...
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2008-08-19
Rami Rauch
added search interface to the Task and Project entities...
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2008-08-18
Tim Reddy Tim
Major bug-fix where some probes in the in-silico qPCR...
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2008-08-18
Tim Reddy Tim
Small change to fix directory structure problem
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2008-08-15
Rami Rauch
These are the template directories and files.
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2008-08-15
Rami Rauch
Replaced 'gaworflow' with 'htsworkflow'; updated settin...
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2008-08-15
Brandon King
Migrating Rami's frontend changes from stanford branch...
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2008-08-14
Rami Rauch
This text file includes step by step SQL commands to...
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2008-08-14
Tim Reddy Tim
Fixed another directory problem: the libraries repo...
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2008-08-14
Tim Reddy Tim
Fixed directories to be more general and easy to set...
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2008-08-14
Tim Reddy Tim
Fixed bug that bailed on empty alignment files. (weird...
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2008-08-14
Tim Reddy Tim
Took our some old targets from the Makefile that are...
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2008-08-14
Tim Reddy Tim
Made changes to add quarterly information to the sequen...
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2008-08-13
Rami Rauch
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2008-08-13
Rami Rauch
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2008-08-13
Rami Rauch
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2008-08-13
Tim Reddy Tim
Big steps on getting the library automation going....
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2008-08-13
Rami Rauch
rendered compatible with the updated MPListener
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2008-08-13
Rami Rauch
(no commit message)
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2008-08-13
Rami Rauch
rendered compatible with the new MainPipelineScript...
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2008-08-13
Rami Rauch
rendered compatible with the new MainPipelineScript...
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2008-08-13
Rami Rauch
rendered completely runnable from runner bot
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2008-08-12
Unknown Author
(no commit message)
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2008-08-12
Unknown Author
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2008-08-09
Unknown Author
Finished adding LibraryMakefile related code. Nothing...
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2008-08-08
Unknown Author
Initial Checkin. Not complete package yet, but a starti...
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2008-08-08
Unknown Author
Initial Checkin
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2008-08-08
Unknown Author
more dev
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2008-08-07
Brandon King
Need the os module.
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