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Update mussa to build on ubuntu 10.04 with qt 4.6.2 +boost 1.40.0.1
[mussa.git] / alg /
2006-09-15 Diane Troutmake our Color class serializable tree | commitdiff
2006-09-14 Diane Troutmake sure we show the start of our sequence name tree | commitdiff
2006-09-14 Diane TroutImplement an optional name in the motif parser tree | commitdiff
2006-09-12 Diane Troutimplement "typical" save and close conventions. tree | commitdiff
2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis... tree | commitdiff
2006-09-12 Diane Troutadd seq_forward tree | commitdiff
2006-09-09 Diane Troutmake really sure load_mupa has a file to parse. tree | commitdiff
2006-09-08 Diane Troutsubsequences now use offsets into the shared_ptr seq_string tree | commitdiff
2006-09-08 Diane Troutcatch a few more potential unchecked shared_ptr derefer... tree | commitdiff
2006-09-07 Diane Troutremove commented out string conversion tree | commitdiff
2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string> tree | commitdiff
2006-09-07 Diane Troutgo back to using const char * in seqcomp tree | commitdiff
2006-08-30 Diane Troutuse shared_ptr to store the sequence string tree | commitdiff
2006-08-29 Diane Troutput basepair alphabets into the Sequence class tree | commitdiff
2006-08-29 Diane Troutgo back to sequence being its own class tree | commitdiff
2006-08-31 Diane Troutneed to #include <cassert> if i'm going to use asserts tree | commitdiff
2006-08-24 Diane Troutstart trying to figure out where the documentation is tree | commitdiff
2006-08-24 Diane Troutupdate sequence serialization to support the xml archive tree | commitdiff
2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence... tree | commitdiff
2006-08-22 Diane Troutcatch the other spurious class decoration tree | commitdiff
2006-08-22 Diane Troutremove unnecessary class member decoration tree | commitdiff
2006-08-12 Diane TroutFix merge issues with the win32 library patch tree | commitdiff
2006-08-12 Brandon KingReorder libraries for win32 tree | commitdiff
2006-08-12 Brandon KingTell unittests to use native file convention for EXAMPL... tree | commitdiff
2006-08-10 Diane TroutTry alpha blending the conservation paths tree | commitdiff
2006-08-10 Diane TroutLet the annotation parser skip html tags tree | commitdiff
2006-08-09 Diane TroutImplement serialize for sequence tree | commitdiff
2006-08-09 Diane Troutstart breaking save out from Mussa::analyze() tree | commitdiff
2006-08-09 Diane TroutAdd documentation about Mussa::soft_threshold tree | commitdiff
2006-08-09 Diane Troutadd dirty flag tree | commitdiff
2006-08-09 Diane Troutchange from cout to clog in some commented out debuggin... tree | commitdiff
2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget tree | commitdiff
2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BI... tree | commitdiff
2006-07-27 Diane Troutadd annot and motif classes to python interface tree | commitdiff
2006-07-21 Diane TroutBuild universal binaries on OS X tree | commitdiff
2006-07-13 Diane Troutstart the trivial sequence filter tree | commitdiff
2006-07-01 Diane TroutSequenceLocation was being intialized with left,right tree | commitdiff
2006-07-01 Diane Troutmake sure subsequences have a species name tree | commitdiff
2006-07-01 Diane TroutImplement UI for subanalysis mode tree | commitdiff
2006-06-30 Diane Troutfix boost::python sequence interface tree | commitdiff
2006-06-30 Diane Troutstore motifs as sequences instead of strings tree | commitdiff
2006-06-29 Diane Troutset_motifs should erase the previous motifs tree | commitdiff
2006-06-29 Diane Troutallow specifying a name for a sequence tree | commitdiff
2006-06-29 Diane Troutupdate the annotation grammer to make species name... tree | commitdiff
2006-06-29 Diane Troutbreak the core of add_motifs loop into a seperate function tree | commitdiff
2006-06-23 Diane TroutGetting closer to a subanalysis mode tree | commitdiff
2006-06-21 Diane TroutMore progress toward subanalysis tree | commitdiff
2006-06-21 Diane Troutuse a specific exception when nextTo breaks tree | commitdiff
2006-06-20 Diane Troutextend annotation names and types to allow punctuation tree | commitdiff
2006-06-17 Diane Troutmake Sequence a subclass of std::string tree | commitdiff
2006-06-16 Diane Troutremove unnecessary class decoration tree | commitdiff
2006-06-16 Diane Troutticket:104 fix some pointer problems with MussaAlignedW... tree | commitdiff
2006-06-14 Diane TroutAMD64 build support tree | commitdiff
2006-06-14 Diane TroutMake cmake happier about my target declariation order tree | commitdiff
2006-06-14 Diane Troutreformat some braces tree | commitdiff
2006-06-13 Diane Troutinclude the sequence coordinates when copying sequence tree | commitdiff
2006-06-12 Brandon Kingalg/glseqbrowser.cpp:127: error: jump to case label tree | commitdiff
2006-06-12 Diane TroutActually copy our selected sequence to the clipboard tree | commitdiff
2006-06-10 Diane Troutpartial implementation of sequence track copy tree | commitdiff
2006-06-09 Diane TroutMore robust eol handling for Sequence::load_fasta tree | commitdiff
2006-06-08 Diane Troutimprove fasta parsing tree | commitdiff
2006-06-08 Diane TroutReport error when sequence couldn't be loaded tree | commitdiff
2006-06-06 Diane Troutkeep track of how far through a seqcomp we've gotten tree | commitdiff
2006-06-03 Diane Troutuse Qt Signals & Slots for progress tracking tree | commitdiff
2006-05-27 Diane Troutadd callback for tracking analysis progress tree | commitdiff
2006-05-27 Diane Troutrename [gset_soft_thres to [gs]et_soft_threshold] tree | commitdiff
2006-05-25 Diane Troutadd some documentation for glseqbrowser::viewport* tree | commitdiff
2006-05-20 Diane Troutturn color back on tree | commitdiff
2006-05-20 Diane Troutticket:62 fix local alignment tree | commitdiff
2006-05-18 Diane Troutexpose more of the sequence class to python tree | commitdiff
2006-05-17 Diane Troutfinish implementing annotation by sequence tree | commitdiff
2006-05-17 Diane Troutswitch to a character based spirit parser tree | commitdiff
2006-05-17 Diane Trouttry to read fasta blocks in the annotation file tree | commitdiff
2006-05-17 Diane Troutuse spirit parser for reading annot file tree | commitdiff
2006-05-16 Diane Troutadd annotations by sequence string tree | commitdiff
2006-05-10 Diane Troutincrease the use of python in mussa tree | commitdiff
2006-04-19 Diane Troutwin32 paths need some conversion tree | commitdiff
2006-04-18 Diane Trouttry to get mussagl to build on win32 tree | commitdiff
2006-04-13 Diane Troutthe fasta error message should include the filename tree | commitdiff
2006-04-13 Diane Troutfix ticket:83 throw an error when we don't have a fasta... tree | commitdiff
2006-04-13 Diane Troutcreate an options structure to indicate if we need... tree | commitdiff
2006-04-12 Diane Troutticket:85 fix, extend code crashes with 1 path tree | commitdiff
2006-04-12 Diane Troutrecord cmake commands to deal with some dependency... tree | commitdiff
2006-04-12 Diane TroutAMD64 needs -fPIC for mussa_core tree | commitdiff
2006-04-12 Diane Troutbuild the python interface tree | commitdiff
2006-04-11 Diane Troutminor fixes for older buildsystems tree | commitdiff
2006-04-08 Diane Troutrename _LIB to _LIBRARY to be more consistent with... tree | commitdiff
2006-04-07 Diane Troutmake include gl.h multiplatform tree | commitdiff
2006-04-07 Diane Troutswitch to using boost::filesystem tree | commitdiff
2006-04-06 Diane Troutcmake setupfiles tree | commitdiff
2006-03-30 Diane Troutallow running without using the gui tree | commitdiff
2006-03-29 Diane Troutkeep the sequence view at higher zoom level tree | commitdiff
2006-03-29 Diane Troutmotifs should render on top of annotations tree | commitdiff
2006-03-29 Diane Troutmake annotations big enough to show up tree | commitdiff
2006-03-29 Diane TroutView sequence alignment at non default thresholds tree | commitdiff
2006-03-29 Diane TroutMove zoom spinbox into its own widget tree | commitdiff
2006-03-28 Diane Troutfix more warnings tree | commitdiff
2006-03-28 Diane Troutthreshold widget shows both base pair and percents tree | commitdiff
2006-03-28 Diane Troutrecover threshold and window size tree | commitdiff
2006-03-28 Diane Troutimprove os x makefiles tree | commitdiff
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MUSSA multi-species alignment tool