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Initial port to python3
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
eland.py
2013-08-13
Diane Trout
Initial port to python3
python3-django1.5
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2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
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2012-07-10
Diane Trout
Create a class to convert contig names into genome...
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2012-07-10
Diane Trout
Guess genome name for building compressed mapping count...
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2012-07-07
Diane Trout
Use sample keys when looking up lane parameters.
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2012-07-06
Diane Trout
Switch to regular dictionary instead of ordered dictionary.
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2012-07-05
Diane Trout
Massively rework eland file finding and indexing.
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2012-06-30
Diane Trout
Disable debug messages for each scanned eland file...
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2012-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-06-30
Diane Trout
Support multiple having an eland file split into multip...
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2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-16
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-05-16
Diane Trout
update summary.py to extract data from HiSeq runs.
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2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
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2011-10-04
Diane Trout
Add support for flowcells analyzed with Casava 1.7
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2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
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2010-09-24
Diane Trout
Handle the case when a sequencing lane lacks any yield...
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2010-09-10
Diane Trout
Add support for CASAVA 1.7
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2009-06-19
Diane Trout
I started using ResultLane, so stop treating it like...
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2009-06-17
Diane Trout
Loading really old run xml files caused the website...
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2009-05-11
Diane Trout
Fix parameter list for base class.
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2009-05-05
Diane Trout
Handle lanes that were only sequenced.
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2009-04-24
Diane Trout
add --clean option to runfolder
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2009-03-16
Diane Trout
Parse runfolders generated with IPAR 1.3 and pipeline...
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2009-02-13
Diane Trout
save longer comment describing change
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2009-02-13
Diane Trout
Aparently some more recent version of multi eland stopped
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2009-02-13
Diane Trout
Merge in the library list, detail, and results download...
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2009-01-06
Diane Trout
Look in Temp directories for some of the files we have...
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2008-12-24
Diane Trout
Handle paired-end eland files.
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2008-12-10
Diane Trout
The summary parsing code now seems to handle paired...
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2008-11-06
Diane Trout
Process eland extended (or multi) read files.
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2008-10-30
Diane Trout
The htsworkflow.pipelines.gerald module was getting...
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