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htsworkflow.git
2012-05-25 Diane Troutreplace tab charcter with spaces in the multiplex index... live commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutFix Multiplex index pluralization commit | commitdiff | tree | snapshot
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-04-12 Diane TroutExtend the adapter id field to support the dual indexed... commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... commit | commitdiff | tree | snapshot
2012-04-02 Diane TroutRemove a dead form commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutChange to using django templates for generating condor... commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutImprove a settings error message, as it was confusing... commit | commitdiff | tree | snapshot
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-03-27 Diane TroutAdd an option to make a mini archive containing just... commit | commitdiff | tree | snapshot
2012-03-26 Diane TroutSwitch to lxml for parsing the summary file. commit | commitdiff | tree | snapshot
2012-03-26 Diane TroutRemove a function from the inifile version of ucsc_gather commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutApparently I forgot to remove a parameter why creating... commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutAdd fastq to the raw format add_xoption commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutAdd a rdf type for ucsc track records commit | commitdiff | tree | snapshot
2012-03-22 Diane TroutMessed up the RDFa for specifying that a library was... commit | commitdiff | tree | snapshot
2012-03-22 Diane TroutUse name instead of library_name as the property descri... commit | commitdiff | tree | snapshot
2012-03-08 Diane TroutActually if I provide an output file, I want to write... commit | commitdiff | tree | snapshot
2012-03-08 Diane TroutChange name of term used for conditions to condition_term commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutUpdate archive script to try and deal with HiSeq multip... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutAlways include the python path when generating the... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutForgot to add split attribute to __eq__ test. commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutAdd extract HiSeq project based split fastq files to... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutUpdate help message since we have a new type of file... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutSupport scanning for split fastq files generated by... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutIgnore some more coverage files commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutAdd module to convert multiple fastq files into a singl... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutAdd ability to print out json structures returned by... commit | commitdiff | tree | snapshot
2012-03-05 Diane TroutUse named tuple for sequence flowcell/start/stop/projec... commit | commitdiff | tree | snapshot
2012-03-02 Diane TroutCore functions for saving and finding fastq files gener... commit | commitdiff | tree | snapshot
2012-03-01 Diane TroutRemove some debug prints commit | commitdiff | tree | snapshot
2012-03-01 Diane TroutSimulate a HiSeq runfolder. commit | commitdiff | tree | snapshot
2012-02-02 Diane TroutMake report prettier. commit | commitdiff | tree | snapshot
2012-01-31 Diane TroutShorten option for specifying model name. commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutFix a typo in some RDF example data commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutMake it possible to filter which genome to run report... commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutAdd ability to refresh library data from our htsw server commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutStart writing a report for "so, what experiments have... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutAdded scanning for libraries that aren't attached to... commit | commitdiff | tree | snapshot
2012-01-25 Diane Troutsplit a function into two. (A query execute function... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutChanged pprint daf attributes to a pformat output via... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutFix 'typo' in a library URN. commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutDon't use assertIn as older ubuntu python doesn't have it commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutInvalid library IDs should 404, not return a useless... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-12-20 Diane Troutwhitespace reformatting commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutRemove eXecute bit from modules commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutInclude the test data for testing importing ucsc downlo... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutAdd in test code for testing downloading the ucsc downl... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutDeleted obsolete tests commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... commit | commitdiff | tree | snapshot
2011-11-22 Diane TroutAdd a method to override command used to convert srf... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUse Node.uri instead of manually trimming off RDF.Node... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutFunction generating index text was assuming there'd... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUpdate library adapter type initial data to match lorie... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutMerge in removal of queuecommand sleep. commit | commitdiff | tree | snapshot
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-11-04 Diane TroutUse a logger initialized to the module name much more... commit | commitdiff | tree | snapshot
2011-11-04 Diane TroutLorian renamed some of the libraries, change our hard... commit | commitdiff | tree | snapshot
2011-10-21 Diane TroutYes generate regular gerald config file. commit | commitdiff | tree | snapshot
2011-10-18 Diane TroutAdd library adapter type to filter choices, commit | commitdiff | tree | snapshot
2011-10-13 Diane TroutAllow replicates 5 & 6 commit | commitdiff | tree | snapshot
2011-10-11 Diane TroutUse "not run" instead of todo to describe libraries... commit | commitdiff | tree | snapshot
2011-10-11 Diane TroutAdd a todo view that shows only libraries that have no commit | commitdiff | tree | snapshot
2011-10-10 Diane TroutRemove ReadPrep and Thumbnail_Images being generated... commit | commitdiff | tree | snapshot
2011-10-10 Diane TroutDon't need to duplicate %t tile in srf command commit | commitdiff | tree | snapshot
2011-10-06 Diane TroutAdd the ability to specify a flowcell id instead of... commit | commitdiff | tree | snapshot
2011-10-04 Diane TroutAdd support for flowcells analyzed with Casava 1.7 commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutSparql query to back create protocol & treatment from... commit | commitdiff | tree | snapshot
2011-09-30 Diane Troutfind submissions, even those without a set creation... commit | commitdiff | tree | snapshot
2011-09-30 Diane Troutstore md5sum of daf files to group different submissions commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) commit | commitdiff | tree | snapshot
2011-09-30 Diane TroutAdd support for new "extraVariables" term in DAF. commit | commitdiff | tree | snapshot
2011-09-22 Diane TroutMark library & flowcell as a type in RDF. commit | commitdiff | tree | snapshot
2011-09-21 Diane TroutSwitch from beautifulsoup to lxml, now that I know... commit | commitdiff | tree | snapshot
2011-09-21 Diane TroutRename ucsc submission namespace to be more consistent... commit | commitdiff | tree | snapshot
2011-09-19 Diane TroutOutput samples that don't have index sequence as well. commit | commitdiff | tree | snapshot
2011-09-19 Diane TroutPython 2.6's DictWriter doesn't have writeheader, so... commit | commitdiff | tree | snapshot
2011-09-17 Diane TroutDisable csrf protection for the json urls commit | commitdiff | tree | snapshot
2011-09-17 Diane TroutAdd support for tracking the multiplex index sequence. 0.5.4 commit | commitdiff | tree | snapshot
2011-09-12 Diane TroutAdd support for first-gen HiSeq flowcells (e.g. ABXX) commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutDjango 1.1's csrf protection appears to be handled... 0.5.3 commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutAdd links to the admin page on the public pages if... commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutMake it so the login link redirects you back to the... commit | commitdiff | tree | snapshot
2011-09-08 Diane TroutEmacs stripped off trailing whitespace commit | commitdiff | tree | snapshot
2011-09-07 Diane TroutAdd link to admin page to flowcell & library pages... commit | commitdiff | tree | snapshot
2011-09-07 Diane TroutRemove margin-right command as it was making a giant... commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutIgnore some files generated by my (diane's) development... commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutAttempt to download DAF data for a encodesubmit submission commit | commitdiff | tree | snapshot
2011-09-02 Diane TroutAdd error message for requesting link-daf but no daf... commit | commitdiff | tree | snapshot
2011-08-31 Diane TroutEnable csrf proection when running under Django 1.2 commit | commitdiff | tree | snapshot
2011-08-18 Diane TroutRescan a flowcell data run once per (setting.RESCAN_DEL... commit | commitdiff | tree | snapshot
2011-08-08 Diane TroutDeal with (failed) in flowcell names. commit | commitdiff | tree | snapshot
2011-08-04 Diane TroutAdd a way to browse the list of entered antibody/antigene commit | commitdiff | tree | snapshot
2011-07-29 Diane TroutMake a test more robust to different versions of librdf commit | commitdiff | tree | snapshot
2011-07-29 Diane TroutConstruct unit tests for inventory/hard disk long term... commit | commitdiff | tree | snapshot
2011-07-28 Brandon W.... An improvement on the inventory system. Getting it... commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software