| 2009-06-10 |
Brandon King | Track which flowcells are archived on which long term... |
commit | commitdiff | tree | snapshot |
| 2009-06-10 |
Diane Trout | Scan more than one rsync repository for directory trees... |
commit | commitdiff | tree | snapshot |
| 2009-06-09 |
Diane Trout | Add code to construct a copy url using a mapping in... |
commit | commitdiff | tree | snapshot |
| 2009-06-05 |
Brandon King | Minor updates to inventory schema based on input from... |
commit | commitdiff | tree | snapshot |
| 2009-06-05 |
Diane Trout | Pyinotify behaves oddly when the stdio file descriptors... |
commit | commitdiff | tree | snapshot |
| 2009-06-04 |
Brandon King | A simple command to request the hard drive serial numbe... |
commit | commitdiff | tree | snapshot |
| 2009-06-01 |
Diane Trout | Consistently use 'watchdir' instead of 'watch_dir'... |
commit | commitdiff | tree | snapshot |
| 2009-05-30 |
Diane Trout | Watch more than one directory tree for modification. |
commit | commitdiff | tree | snapshot |
| 2009-05-30 |
Diane Trout | Don't print the discovered mount point. |
commit | commitdiff | tree | snapshot |
| 2009-05-29 |
Brandon King | First attempt at an inventory tracking database |
commit | commitdiff | tree | snapshot |
| 2009-05-27 |
Diane Trout | Add a minimal test case to test a small bit of the... |
commit | commitdiff | tree | snapshot |
| 2009-05-11 |
Diane Trout | More consistently split the flowcell id and status... |
commit | commitdiff | tree | snapshot |
| 2009-05-11 |
Diane Trout | Fix parameter list for base class. |
commit | commitdiff | tree | snapshot |
| 2009-05-06 |
Diane Trout | Update htsworkflow.util.fctracker module to work with... |
commit | commitdiff | tree | snapshot |
| 2009-05-05 |
Diane Trout | Update the django app to report "raw reads" for a seque... |
commit | commitdiff | tree | snapshot |
| 2009-05-05 |
Diane Trout | Handle lanes that were only sequenced. |
commit | commitdiff | tree | snapshot |
| 2009-05-05 |
Diane Trout | Return NaN, NaN if a mean +/- deviation value was undef... |
commit | commitdiff | tree | snapshot |
| 2009-05-05 |
Diane Trout | Allow overriding the queued commands environment. |
commit | commitdiff | tree | snapshot |
| 2009-05-01 |
Diane Trout | Add wait_for_ipar option to the spool watcher config... |
commit | commitdiff | tree | snapshot |
| 2009-04-30 |
Diane Trout | Allow mapping library IDs to the library primary key |
commit | commitdiff | tree | snapshot |
| 2009-04-24 |
Diane Trout | add --clean option to runfolder |
commit | commitdiff | tree | snapshot |
| 2009-04-24 |
Diane Trout | Allow picking runfolder variant we should be trying... |
commit | commitdiff | tree | snapshot |
| 2009-04-08 |
Diane Trout | Stop assuming that library_id == pk. |
commit | commitdiff | tree | snapshot |
| 2009-04-04 |
Diane Trout | Don't crash if we can't find the flowcell run xml file |
commit | commitdiff | tree | snapshot |
| 2009-04-04 |
Diane Trout | Display the affiliations on the public library detail... |
commit | commitdiff | tree | snapshot |
| 2009-04-01 |
Diane Trout | Show the "Amplified from sample" as the parent library... |
commit | commitdiff | tree | snapshot |
| 2009-03-31 |
Diane Trout | Use the image directory name to detect what type of... |
commit | commitdiff | tree | snapshot |
| 2009-03-31 |
Diane Trout | Don't attempt to save xml for a matrix in firecrest... |
commit | commitdiff | tree | snapshot |
| 2009-03-31 |
Diane Trout | remove some useless debugging print statements |
commit | commitdiff | tree | snapshot |
| 2009-03-31 |
Diane Trout | provide an error message if no run is found with the... |
commit | commitdiff | tree | snapshot |
| 2009-03-30 |
Diane Trout | Add unit test to check that the crosstalk matrix was... |
commit | commitdiff | tree | snapshot |
| 2009-03-30 |
Diane Trout | IPAR detection is more reliable than firecrest so do... |
commit | commitdiff | tree | snapshot |
| 2009-03-30 |
Diane Trout | Allow specifying a run instead of just scanning the... |
commit | commitdiff | tree | snapshot |
| 2009-03-30 |
Diane Trout | Add some logging code to report what the program is... |
commit | commitdiff | tree | snapshot |
| 2009-03-28 |
Diane Trout | For pipeline 1.1rc1 or 1.3.2, look for the matrix files... |
commit | commitdiff | tree | snapshot |
| 2009-03-28 |
Diane Trout | Move sample data from simulate_runfolder into testdata |
commit | commitdiff | tree | snapshot |
| 2009-03-25 |
Diane Trout | Make the visiable names match how the "group" and ... |
commit | commitdiff | tree | snapshot |
| 2009-03-20 |
Diane Trout | Consume output form the subprocesses |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | Actually we want fastq files, not scarf files |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | Generate a gerald config file, even if the genome is... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | provide more options for picking how much logging info... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | only report cwd when starting the queue monitor, not... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | ignore *.py[co] files |
commit | commitdiff | tree | snapshot |
| 2009-03-16 |
Diane Trout | Parse runfolders generated with IPAR 1.3 and pipeline... |
commit | commitdiff | tree | snapshot |
| 2009-03-12 |
Diane Trout | Use django's FilteredSelectMultiple javascript widget... |
commit | commitdiff | tree | snapshot |
| 2009-03-12 |
Diane Trout | allow searching by cluster station or sequencer name... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | We can't search linked tables. This is a problem that... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | The public library page needed to pass eland.genome_map... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Improve support for eland searching a single fasta... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Use gigio's fully name instead of nickname |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Let cluster_station and sequencer default to the first... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | replace % with %% in the library names, so retrieve... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Change flowcell admin index page to include a formatted... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Change default picomolarity to 5, and allow overriding... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Add commented htsworkflow.ini.example as documentation... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Sort by library id, not creation data closes [ticket... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Add flowcell notes field back to the admin page |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | flowcell model moved from samples to experiments, eland... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | The default django css pages wanted a few gifs, which... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Grab more of the admin css pages that were refering... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Display the pM on the public library detail page. |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Allow filtering by the new hidden field on the library... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Lorian asked that the library size default to 225 when... |
commit | commitdiff | tree | snapshot |
| 2009-03-06 |
Diane Trout | Make the public library browsing page support several... |
commit | commitdiff | tree | snapshot |
| 2009-03-06 |
Diane Trout | Add another username to manage for our made_for to... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Add get_absolute_url to Library model and use it for... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Implement experiment type as a seperate table. |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Change cluster_mac_id and seq_mac_id from text fields... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | For one of our more recent libraries, the successful_pM... |
commit | commitdiff | tree | snapshot |
| 2009-02-28 |
Diane Trout | Add a link to the public library summary page off from... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Add my script to convert Caltech's made_for field to... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Update some of Rami's GERALD config file generator... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Only configure logging if we're being run as a script |
commit | commitdiff | tree | snapshot |
| 2009-02-26 |
Diane Trout | better handle the case when Affilations.contact is... |
commit | commitdiff | tree | snapshot |
| 2009-02-26 |
Diane Trout | Remove a few more fields that we dont use, and change... |
commit | commitdiff | tree | snapshot |
| 2009-02-24 |
Diane Trout | simplify library admin index view |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | Add script to convert current caltech v0.1.x database... |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | Merge flowcell 'paired_end' flag from v0.1 branch |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | remove cfg_defaults. It was part of an idea I was start... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Reverse a mistake. DataRuns is from Rami and should... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | enable sort of library view by descending library_id |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | save longer comment describing change |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Aparently some more recent version of multi eland stopped |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Merge in the library list, detail, and results download... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | use the compression handling auto-opener for our eland... |
commit | commitdiff | tree | snapshot |
| 2009-02-12 |
Diane Trout | make our API docstrings more epydoc friendly |
commit | commitdiff | tree | snapshot |
| 2009-02-12 |
Diane Trout | Add load_pipeline_run_xml, a little function that feeds... |
commit | commitdiff | tree | snapshot |
| 2009-02-05 |
Diane Trout | Drop 'using %s as cwd' down to just debug level. |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | extended command line configuration parsing and add... |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | Try to make runfolder results extraction more robust |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | Update to not hard code the config file name and the... |
commit | commitdiff | tree | snapshot |
| 2009-01-24 |
Diane Trout | insert code to do ~ home directory expansion |
commit | commitdiff | tree | snapshot |
| 2009-01-23 |
Diane Trout | Add in Rami's report template, and adjust the paths... |
commit | commitdiff | tree | snapshot |
| 2009-01-23 |
Diane Trout | Add id as an AutoNumber(primary_key=True) field and... |
commit | commitdiff | tree | snapshot |
| 2009-01-21 |
Diane Trout | Merge in Rami's changes from last friday. |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | add some testing code for the runner daemon |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | add empty admin.py for eland_config app |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | Merged much of the stanford htsworkflow frontend into... |
commit | commitdiff | tree | snapshot |
| 2009-01-08 |
Diane Trout | This is a partial merge of the stanford branch with... |
commit | commitdiff | tree | snapshot |
| 2009-01-06 |
Diane Trout | Look in Temp directories for some of the files we have... |
commit | commitdiff | tree | snapshot |
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