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make doxygen output more focused
2006-03-14
Diane Trout
make doxygen output more focused
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2006-03-14
Diane Trout
load and display a motif list
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2006-03-14
Diane Trout
document win_append, thres_append
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2006-03-14
Diane Trout
just load the sequence
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2006-03-14
Diane Trout
rename motif class used in fltk code to fltk_motif
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2006-03-14
Diane Trout
attach motifs to a sequence object
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2006-03-12
Diane Trout
implement a color mapper class
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2006-03-12
Diane Trout
tell darcs whats boring to make whatsnew more useful
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2006-03-12
Diane Trout
There can be only one (filename convention)
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2006-03-11
Diane Trout
Thicker bars, better letters
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2006-03-11
Diane Trout
make it easier to build on win32
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2006-03-11
Diane Trout
refactor glsequence to be more testable
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2006-03-09
Diane Trout
we can scroll
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2006-03-09
Diane Trout
resolve complicated merge conflict
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2006-03-08
Diane Trout
fix segfault when changing soft threshold when no analysis...
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2006-03-06
Diane Trout
drawing sequence basepairs.
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2006-03-05
Diane Trout
mild improvements to demo python sequence view
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2006-03-05
Diane Trout
record selected track
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tree
2006-03-04
Diane Trout
python wrap mussa, nwaypaths, and conservedpaths
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2006-03-04
Diane Trout
select paths and highlight them
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2006-03-03
Diane Trout
improve error handling for loading
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2006-03-03
Diane Trout
we can load parameter files
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2006-03-02
Diane Trout
refining an empty pathz would cause a segfault
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2006-03-02
Diane Trout
connect a spin box to the scene zoom slot
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2006-03-02
Diane Trout
hacked thresholding
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2006-03-02
Diane Trout
use ConservedPath class instead of vector<int>
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2006-02-28
Diane Trout
move glsequence into "alg" component
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2006-03-01
Diane Trout
cleanup nway code
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2006-03-01
Diane Trout
line rendering fixes
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tree
2006-03-08
Diane Trout
move glsequence into "alg" comonent
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2006-02-28
Diane Trout
show conservation paths
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2006-02-28
Diane Trout
fix many mussa_class.cxx warnings
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2006-02-28
Diane Trout
advance_sp_itor_track was triggering an infinite loop
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2006-02-28
Diane Trout
render the sequences from the mussa analysis
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2006-02-28
Diane Trout
provide an annotation for our example data
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2006-02-25
Diane Trout
put the fake lines at a clipable depth
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2006-02-25
Diane Trout
add a toolbar with toggle motifs and the base pair...
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2006-02-25
Diane Trout
load mupa and show fake path scene
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2006-02-25
Diane Trout
reduce warning messages in sequence.cxx
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2006-02-25
Diane Trout
tell doxygen to create docs for the qt classes too
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2006-02-25
Diane Trout
skeleten of a qt version of mussa
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2006-02-24
Diane Trout
refactor nway_other.cxx
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2006-02-24
Diane Trout
use exceptions to indicate Mussa::analyze failed
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2006-02-24
Diane Trout
subanalysis menu option wont crash mussa
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2006-02-24
Diane Trout
only include headers by names relative to project base...
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2006-02-23
Diane Trout
build mussa with CXXFLAGS, so I can run gdb.
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2006-02-23
Diane Trout
fixing the number of sequences at setup is silly
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2006-02-23
Diane Trout
fix inability to do reverse compliments
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2006-02-23
Diane Trout
more thoroughly document FLPs
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2006-02-23
Diane Trout
use boost to delete my temp file
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2006-02-23
Diane Trout
refactor and test FLPs
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2006-02-22
Diane Trout
rename mussa_nway to nway_paths
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2006-02-22
Diane Trout
i think a binary called unittests is more obvious.
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2006-02-22
Diane Trout
rename the_Seqs to the_seqs
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2006-02-22
Diane Trout
load a mupa file and test it
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2006-02-22
Diane Trout
add get_analysis_mode_name
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2006-02-22
Diane Trout
refactor and test sequence class
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2006-02-22
Diane Trout
put exception definitions in one place and use them
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2006-02-22
Diane Trout
always use all the prequisites when building
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2006-02-22
Diane Trout
force doxygen to look at all of our directories
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tree
2006-02-22
Diane Trout
rename some mussa_class members (ana_name to analysis_name)
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2006-02-22
Diane Trout
test mussa class
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2006-02-22
Diane Trout
unit test skeleton
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2006-02-22
Diane Trout
remove library blessings
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2006-02-21
Diane Trout
break algorithm out into a subdirectory.
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2006-02-21
Diane Trout
build fltk gui stuff as a library
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2006-02-21
Diane Trout
we also want docs about the fltk gui code
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2006-02-21
Diane Trout
add notes of what i learned about seqcomp and nway
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2006-02-04
Diane Trout
add parse error exceptions for the command line args.
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2006-02-04
Diane Trout
number of seqs is more informative than seq num
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2006-02-04
Diane Trout
massive code move
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2006-02-03
Diane Trout
make headers less interdependent
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2006-02-02
Diane Trout
remove unnecessary member variable length.
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2005-09-27
Diane Trout
[project @ 16]
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2005-09-27
Diane Trout
[project @ 15]
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2005-09-22
Diane Trout
[project @ 14]
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2005-09-21
Diane Trout
[project @ 13]
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2005-09-21
Diane Trout
[project @ 12]
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2005-09-21
Diane Trout
[project @ 11]
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2005-09-21
Diane Trout
[project @ 10]
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2005-09-21
Diane Trout
[project @ 9]
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2005-09-21
Diane Trout
[project @ 8]
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2005-09-21
Diane Trout
[project @ 7]
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2005-09-16
Diane Trout
[project @ 6]
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2005-09-16
Diane Trout
[project @ 5]
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2005-09-16
Diane Trout
[project @ 4]
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2005-09-16
Diane Trout
[project @ 3]
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2005-09-16
Diane Trout
[project @ 2]
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