woldlab.caltech.edu Git - pysam.git/commit

author	Diane Trout <diane@caltech.edu>
	Tue, 6 Nov 2012 22:36:52 +0000 (14:36 -0800)
committer	Diane Trout <diane@caltech.edu>
	Tue, 6 Nov 2012 22:36:52 +0000 (14:36 -0800)
commit	e1756c41e7a1d7cc01fb95e42df9dd04da2d2991
tree	7adc2223d587f645d58ee5ff1ca0ee9eb8b3bb9a	tree \| snapshot
parent	ca46ef4ba4a883c57cea62d5bf1bc021f1185109	commit \| diff

Imported Upstream version 0.5

55 files changed:

PKG-INFO		diff \| blob \| history
pysam.egg-info/PKG-INFO		diff \| blob \| history
pysam.egg-info/SOURCES.txt		diff \| blob \| history
pysam/TabProxies.c		diff \| blob \| history
pysam/TabProxies.pxd		diff \| blob \| history
pysam/TabProxies.pyx		diff \| blob \| history
pysam/VCF.py	[new file with mode: 0644]	blob
pysam/__init__.py		diff \| blob \| history
pysam/csamtools.c		diff \| blob \| history
pysam/csamtools.pxd		diff \| blob \| history
pysam/csamtools.pyx		diff \| blob \| history
pysam/ctabix.c		diff \| blob \| history
pysam/ctabix.pxd		diff \| blob \| history
pysam/ctabix.pyx		diff \| blob \| history
pysam/cvcf.c		diff \| blob \| history
pysam/pysam_util.c		diff \| blob \| history
pysam/pysam_util.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/bam.c.pysam.c		diff \| blob \| history
samtools/bam.h		diff \| blob \| history
samtools/bam2bcf.c.pysam.c		diff \| blob \| history
samtools/bam2bcf.h		diff \| blob \| history
samtools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
samtools/bam_aux.c.pysam.c		diff \| blob \| history
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_index.c.pysam.c		diff \| blob \| history
samtools/bam_maqcns.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_maqcns.h	[new file with mode: 0644]	blob
samtools/bam_md.c.pysam.c		diff \| blob \| history
samtools/bam_pileup.c.pysam.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_reheader.c.pysam.c	[deleted file]	blob \| history
samtools/bam_tview.c.pysam.c		diff \| blob \| history
samtools/bcftools/bcf.h		diff \| blob \| history
samtools/bcftools/bcfutils.c.pysam.c		diff \| blob \| history
samtools/bcftools/call1.c.pysam.c		diff \| blob \| history
samtools/bcftools/em.c.pysam.c		diff \| blob \| history
samtools/bcftools/mut.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/prob1.c.pysam.c		diff \| blob \| history
samtools/bcftools/prob1.h		diff \| blob \| history
samtools/bedidx.c.pysam.c		diff \| blob \| history
samtools/faidx.c.pysam.c		diff \| blob \| history
samtools/glf.c.pysam.c	[new file with mode: 0644]	blob
samtools/glf.h	[new file with mode: 0644]	blob
samtools/kprobaln.c.pysam.c		diff \| blob \| history
samtools/kseq.h		diff \| blob \| history
samtools/misc/seqtk.c.pysam.c	[deleted file]	blob \| history
samtools/msvc_compat.h	[new file with mode: 0644]	blob
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/sample.c.pysam.c		diff \| blob \| history
setup.py		diff \| blob \| history
tabix/msvc_compat.h	[new file with mode: 0644]	blob
tests/example.py		diff \| blob \| history
tests/pysam_test.py		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history

debian packaging for pysam

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