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choose alignment needs to force the sequences to redraw
2006-03-29
Diane Trout
choose alignment needs to force the sequences to redraw
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2006-03-29
Diane Trout
Provide a zoom widget in MussaAlignedWindow
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2006-03-29
Diane Trout
Move zoom spinbox into its own widget
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2006-03-29
Diane Trout
setAlignment, as a target of a qt signal, needs to...
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2006-03-29
Diane Trout
ignore some generated product
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2006-03-28
Diane Trout
fix more warnings
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2006-03-28
Diane Trout
threshold widget shows both base pair and percents
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2006-03-28
Diane Trout
recover threshold and window size
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2006-03-28
Diane Trout
improve os x makefiles
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2006-03-28
Diane Trout
use qt resources for icons
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2006-03-23
Diane Trout
disable coloring things with reverse compliment colors.
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2006-03-23
Diane Trout
define an analysis should keep settings
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2006-03-23
Diane Trout
change from slider to spinner for threshold
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2006-03-23
Diane Trout
better sidebar rendering
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2006-03-22
Diane Trout
fix selection box coordinate bugs
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2006-03-22
Diane Trout
spurious mouseReleaseEvent caused a crash
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2006-03-22
Diane Trout
finish dialog box to setup an analysis
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2006-03-22
Diane Trout
Increase line thickness
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2006-03-22
Diane Trout
provide more information in the about box.
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2006-03-22
Diane Trout
bless osx Qt components and make a .dmg
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2006-03-21
Diane Trout
tell doxygen about motif_editor and mussa_setup_dialog
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2006-03-21
Diane Trout
provide a user interface to edit motifs
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2006-03-21
Diane Trout
resizing should also change the sequence position indicators
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2006-03-21
Diane Trout
hopefully this fixes the off by one error
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2006-03-21
Diane Trout
when changing alignment the position also needs to...
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2006-03-21
Diane Trout
set inital left position
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2006-03-20
Diane Trout
resizing increases the viewable world
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2006-03-20
Diane Trout
changing the set of links does need to redraw
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2006-03-20
Diane Trout
Mussa aligned sequence view seems to work
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2006-03-20
Diane Trout
dont crash when loading a new analysis
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2006-03-19
Diane Trout
draw alignment lines
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2006-03-19
Diane Trout
render sequence correctly in mussa aligned window
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2006-03-19
Diane Trout
implement zoom in terms of base pairs per pixel
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2006-03-18
Diane Trout
center on path
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2006-03-18
Diane Trout
define window for showing a mussa alignment
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2006-03-17
Diane Trout
refactored PathScene into SequenceBrowserWidget
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2006-03-16
Diane Trout
specify where the gl.h is on a mac
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2006-03-16
Diane Trout
fix motif coloring
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2006-03-16
Diane Trout
track labels
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2006-03-16
Diane Trout
re-implement selection
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2006-03-16
Diane Trout
computation for a path segment was wrong
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2006-03-15
Diane Trout
fix the scrollbar
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2006-03-15
Diane Trout
make the path view independent of type of connection
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2006-03-14
Diane Trout
make doxygen output more focused
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2006-03-14
Diane Trout
load and display a motif list
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2006-03-14
Diane Trout
document win_append, thres_append
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2006-03-14
Diane Trout
just load the sequence
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2006-03-14
Diane Trout
rename motif class used in fltk code to fltk_motif
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2006-03-14
Diane Trout
attach motifs to a sequence object
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2006-03-12
Diane Trout
implement a color mapper class
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2006-03-12
Diane Trout
tell darcs whats boring to make whatsnew more useful
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2006-03-12
Diane Trout
There can be only one (filename convention)
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2006-03-11
Diane Trout
Thicker bars, better letters
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2006-03-11
Diane Trout
make it easier to build on win32
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2006-03-11
Diane Trout
refactor glsequence to be more testable
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2006-03-09
Diane Trout
we can scroll
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2006-03-09
Diane Trout
resolve complicated merge conflict
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2006-03-08
Diane Trout
fix segfault when changing soft threshold when no analysis...
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2006-03-06
Diane Trout
drawing sequence basepairs.
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2006-03-05
Diane Trout
mild improvements to demo python sequence view
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2006-03-05
Diane Trout
record selected track
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2006-03-04
Diane Trout
python wrap mussa, nwaypaths, and conservedpaths
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2006-03-04
Diane Trout
select paths and highlight them
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2006-03-03
Diane Trout
improve error handling for loading
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2006-03-03
Diane Trout
we can load parameter files
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2006-03-02
Diane Trout
refining an empty pathz would cause a segfault
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2006-03-02
Diane Trout
connect a spin box to the scene zoom slot
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2006-03-02
Diane Trout
hacked thresholding
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2006-03-02
Diane Trout
use ConservedPath class instead of vector<int>
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2006-02-28
Diane Trout
move glsequence into "alg" component
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2006-03-01
Diane Trout
cleanup nway code
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2006-03-01
Diane Trout
line rendering fixes
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2006-03-08
Diane Trout
move glsequence into "alg" comonent
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2006-02-28
Diane Trout
show conservation paths
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2006-02-28
Diane Trout
fix many mussa_class.cxx warnings
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2006-02-28
Diane Trout
advance_sp_itor_track was triggering an infinite loop
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2006-02-28
Diane Trout
render the sequences from the mussa analysis
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2006-02-28
Diane Trout
provide an annotation for our example data
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2006-02-25
Diane Trout
put the fake lines at a clipable depth
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2006-02-25
Diane Trout
add a toolbar with toggle motifs and the base pair...
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2006-02-25
Diane Trout
load mupa and show fake path scene
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2006-02-25
Diane Trout
reduce warning messages in sequence.cxx
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2006-02-25
Diane Trout
tell doxygen to create docs for the qt classes too
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2006-02-25
Diane Trout
skeleten of a qt version of mussa
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2006-02-24
Diane Trout
refactor nway_other.cxx
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2006-02-24
Diane Trout
use exceptions to indicate Mussa::analyze failed
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2006-02-24
Diane Trout
subanalysis menu option wont crash mussa
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2006-02-24
Diane Trout
only include headers by names relative to project base...
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2006-02-23
Diane Trout
build mussa with CXXFLAGS, so I can run gdb.
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2006-02-23
Diane Trout
fixing the number of sequences at setup is silly
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2006-02-23
Diane Trout
fix inability to do reverse compliments
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2006-02-23
Diane Trout
more thoroughly document FLPs
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2006-02-23
Diane Trout
use boost to delete my temp file
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2006-02-23
Diane Trout
refactor and test FLPs
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2006-02-22
Diane Trout
rename mussa_nway to nway_paths
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2006-02-22
Diane Trout
i think a binary called unittests is more obvious.
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2006-02-22
Diane Trout
rename the_Seqs to the_seqs
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2006-02-22
Diane Trout
load a mupa file and test it
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2006-02-22
Diane Trout
add get_analysis_mode_name
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2006-02-22
Diane Trout
refactor and test sequence class
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