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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / htsworkflow / pipelines / test /
2014-10-23 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-10 Diane TroutMake sure we can load a run file that lacks alignment... tree | commitdiff
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2013-12-17 Diane Troutremove some test code debugging print statements tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... tree | commitdiff
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... tree | commitdiff
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-01-16 Diane TroutSupport scanning HiSeq runs with multiple analyses. tree | commitdiff
2013-01-09 Diane TroutA better resolution to a possible circular dependency. tree | commitdiff
2013-01-08 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-01-08 Diane TroutTry to make Aligned result directories optional in... tree | commitdiff
2013-01-08 Diane TroutAdd unaligned stats files to hiseq test case tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutProgress using rdf model to link fastqs with flowcell... tree | commitdiff
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-06 Diane TroutTest proper setting of sequence project variable tree | commitdiff
2012-08-02 Diane TroutTest more of the sequences class. tree | commitdiff
2012-07-14 Diane TroutAttempt to guess raw sequence type for a run. tree | commitdiff
2012-07-12 Diane TroutRe-enable some suppressed tests and update them for... tree | commitdiff
2012-07-11 Diane TroutTest reading the xml out of a file too. tree | commitdiff
2012-07-10 Diane TroutFix import statement and typos for genomemap tree | commitdiff
2012-07-10 Diane TroutCreate a class to convert contig names into genome... tree | commitdiff
2012-07-07 Diane TroutUse sample keys when looking up lane parameters. tree | commitdiff
2012-07-06 Diane TroutA few python 2.6 test case incompatibilities. tree | commitdiff
2012-07-06 Diane TroutSwitch to regular dictionary instead of ordered dictionary. tree | commitdiff
2012-07-05 Diane TroutMassively rework eland file finding and indexing. tree | commitdiff
2012-07-05 Diane TroutRename chromosome in hiseq test set to match our fake... tree | commitdiff
2012-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-06-30 Diane TroutSupport multiple having an eland file split into multip... tree | commitdiff
2012-06-30 Diane TroutSome minor tweaks to rta 1.12 testing. tree | commitdiff
2012-06-30 Diane TroutProperly code in tabs for simulated hiseq export files tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-06-12 Diane TroutAdd a software (name) property to firecrest, ipar,... tree | commitdiff
2012-06-11 Diane TroutReturn a gerald version number as a number and not... tree | commitdiff
2012-06-02 Diane TroutSplit lane parameters into seperate classes for GA... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-16 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-16 Diane Troutupdate summary.py to extract data from HiSeq runs. tree | commitdiff
2012-05-15 Diane TroutFix bugs introduduced by the improved HiSeq runfolder... tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-04-12 Diane TroutExtend the adapter id field to support the dual indexed... tree | commitdiff
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-03-26 Diane TroutSwitch to lxml for parsing the summary file. tree | commitdiff
2012-03-06 Diane TroutSupport scanning for split fastq files generated by... tree | commitdiff
2012-03-06 Diane TroutAdd module to convert multiple fastq files into a singl... tree | commitdiff
2012-03-05 Diane TroutUse named tuple for sequence flowcell/start/stop/projec... tree | commitdiff
2012-03-02 Diane TroutCore functions for saving and finding fastq files gener... tree | commitdiff
2012-03-01 Diane TroutRemove some debug prints tree | commitdiff
2012-03-01 Diane TroutSimulate a HiSeq runfolder. tree | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-10-04 Diane TroutAdd support for flowcells analyzed with Casava 1.7 tree | commitdiff
2011-09-17 Diane TroutAdd support for tracking the multiplex index sequence. 0.5.4 tree | commitdiff
2011-09-12 Diane TroutAdd support for first-gen HiSeq flowcells (e.g. ABXX) tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-11 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-11 Diane TroutConvert Rami's DataRun feature to something useful... tree | commitdiff
2011-06-09 Diane TroutMove test srf files to testdata directory so I can... tree | commitdiff
2011-06-09 Diane TroutAdd a method to return the runfolder name. tree | commitdiff
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-15 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-07 Diane TroutAdd in a little bit of qseq2fastq testing code. More... tree | commitdiff
2011-02-03 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-01-25 Diane TroutFix typo in a function name. tree | commitdiff
2010-11-01 Diane TroutCheck for s_${lane}_02_matrix.txt as well as s_${lane... tree | commitdiff
2010-09-10 Diane TroutAdd support for CASAVA 1.7 tree | commitdiff
2010-06-10 Diane TroutExtend htsworkflow.pipelines.sequences to also try... tree | commitdiff
2010-06-10 Diane TroutMove the code to scan the sequence file archive to... tree | commitdiff
2010-04-23 Diane TroutUpdate summary script to read from the GERALD Summary... tree | commitdiff
2010-01-21 Diane TroutUpdate test code to deal with the switch to storing... tree | commitdiff
2009-10-06 Diane TroutUse eland_extended or eland_pair instead of eland for... tree | commitdiff
2009-10-02 Diane TroutTest the updated version of extract results that builds... tree | commitdiff
2009-09-26 Diane TroutImplement a client side config file generator. tree | commitdiff
2009-06-17 Diane TroutAdd support for extracting data out of Illumina's new... tree | commitdiff
2009-06-17 Diane TroutLoading really old run xml files caused the website... tree | commitdiff
2009-06-17 Diane Troutremove spurious debug print statements tree | commitdiff
2009-05-05 Diane TroutHandle lanes that were only sequenced. tree | commitdiff
2009-03-30 Diane TroutAdd unit test to check that the crosstalk matrix was... tree | commitdiff
2009-03-28 Diane TroutFor pipeline 1.1rc1 or 1.3.2, look for the matrix files... tree | commitdiff
2009-03-28 Diane TroutMove sample data from simulate_runfolder into testdata tree | commitdiff
2009-03-16 Diane TroutParse runfolders generated with IPAR 1.3 and pipeline... tree | commitdiff
2009-03-10 Diane TroutImprove support for eland searching a single fasta... tree | commitdiff
2008-12-24 Diane TroutHandle paired-end eland files. tree | commitdiff
2008-12-10 Diane TroutThe summary parsing code now seems to handle paired... tree | commitdiff
2008-12-09 Diane TroutTest 1.1rc1 style runs, which unfortunately require... tree | commitdiff
2008-12-03 Diane TroutAdd test code to see if runfolder can handle something... tree | commitdiff
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htsworkflow sequencing LIMS software