woldlab.caltech.edu Git - htsworkflow.git/search

2012-11-14	Diane Trout	Add error message for typoing a result map filename.	commit \| commitdiff \| tree
2012-11-14	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-10-11	Diane Trout	Catch another lookup error.	commit \| commitdiff \| tree
2012-09-27	Diane Trout	older librdf wanted to include type information when...	commit \| commitdiff \| tree
2012-09-27	Diane Trout	When collecting files for a geo submission, group on...	commit \| commitdiff \| tree
2012-09-25	Diane Trout	This might actually generate soft file with raw & supplement...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Merge changing lane_number to string and sequence finding...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Add a log message to for debugging	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Define XHTML_RDF_DTD as None when we can't load the DTD	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Make the public html pages valid xhtml, and validate...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	remove some dead commented out code.	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Fix (some) missing closing tags.	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Make a validation error message between different ages...	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Also make the library index page conform to htsworkflow...	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Minor tweaks to deal with the older version of librdf...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Use htsworkflow ontology to validate various RDF using...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Refactor property type validator to support multiple...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Add stub xhtml vocab ontology, to make model validation...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htsworkflow	commit \| commitdiff \| tree
2012-09-18	Diane Trout	email.bcc should be a list, not a nested list.	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Improvements to rdfinfer.	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Change rdfhelp.dump_model so you can specify a destination...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Progress using rdf model to link fastqs with flowcell...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-09-15	Diane Trout	Start implementing infering triples.	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Be more defensive if the database is missing some data...	commit \| commitdiff \| tree
2012-09-12	Diane Trout	fix a wrong variable name	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Tweaks to make the sample gather query faster.	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Add a helpful error message when we need the submission...	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Another tweak to allow parser detection to work on...	commit \| commitdiff \| tree
2012-09-11	Diane Trout	Better parser guessing when grabbing plain text from...	commit \| commitdiff \| tree
2012-09-10	Diane Trout	Use the same model for building fastqs as for building...	commit \| commitdiff \| tree
2012-09-10	Diane Trout	Allow retrying retrieving rdf from website a few times.	commit \| commitdiff \| tree
2012-09-01	Diane Trout	Import flowcell information into our model this allows	commit \| commitdiff \| tree
2012-09-01	Diane Trout	Have librdf open the urls in load_into_model instead...	commit \| commitdiff \| tree
2012-09-01	Diane Trout	Automatically add the flowcell subdirectory to the...	commit \| commitdiff \| tree
2012-08-31	Diane Trout	Older rdf library doesn't like unicode strings as nodes	commit \| commitdiff \| tree
2012-08-31	Diane Trout	Fix matching scanned sequence files to library IDs...	commit \| commitdiff \| tree
2012-08-31	Diane Trout	Inherit from MutableMapping for ResultMap.	commit \| commitdiff \| tree
2012-08-31	Diane Trout	Allow option to save/restore a sequence class to a...	commit \| commitdiff \| tree
2012-08-28	Diane Trout	Test RDFa encoded information for flowcell & libraries.	commit \| commitdiff \| tree
2012-08-28	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-08-28	Diane Trout	sanitize_literal had trouble with empty strings.	commit \| commitdiff \| tree
2012-08-28	Diane Trout	Attempt to come up with regexp to detect hiseq formatted...	commit \| commitdiff \| tree
2012-08-09	Diane Trout	Fix some mismatches between variable names in python...	commit \| commitdiff \| tree
2012-08-07	Diane Trout	Create a lane to file name turtle data file	commit \| commitdiff \| tree
2012-08-07	Diane Trout	Simplify code to see if we already have a DataRun created.	commit \| commitdiff \| tree
2012-08-06	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-08-06	Diane Trout	Don't link to lane for the raw result files section.	commit \| commitdiff \| tree
2012-08-06	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-08-06	Diane Trout	Use default printer settings again.	commit \| commitdiff \| tree
2012-08-06	Diane Trout	Test proper setting of sequence project variable	commit \| commitdiff \| tree
2012-08-02	Diane Trout	Test more of the sequences class.	commit \| commitdiff \| tree
2012-08-02	Diane Trout	Fix a few more formatting issues with the geo template	commit \| commitdiff \| tree
2012-08-01	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-08-01	Diane Trout	GEO wanted both files for a paired lane to be on a...	commit \| commitdiff \| tree
2012-07-27	Diane Trout	Fix issues introduced when switching to the django...	commit \| commitdiff \| tree
2012-07-25	Diane Trout	Actually we want to capture the unanalyzed lanes if...	commit \| commitdiff \| tree
2012-07-24	Diane Trout	Get actual list of sequencers used for a library.	commit \| commitdiff \| tree
2012-07-23	Diane Trout	Update to our current IPs. I'm tired of syncdb overwriting...	commit \| commitdiff \| tree
2012-07-19	Diane Trout	Adapt building qseq or srf archives to use SampleKey...	commit \| commitdiff \| tree
2012-07-19	Diane Trout	Update save_raw_data to SampleKey api	commit \| commitdiff \| tree
2012-07-19	Diane Trout	Add in a few more genomes to detection code	commit \| commitdiff \| tree
2012-07-17	Diane Trout	Fix library viewing code to read HiSeq run xmls.	commit \| commitdiff \| tree
2012-07-16	Diane Trout	Remove default sequence-format so the new auto-detector...	commit \| commitdiff \| tree
2012-07-14	Diane Trout	Attempt to guess raw sequence type for a run.	commit \| commitdiff \| tree
2012-07-13	Diane Trout	Fix a refactoring error	commit \| commitdiff \| tree
2012-07-12	Diane Trout	Look for RTAConfig.xml file generated by pipeline 1...	commit \| commitdiff \| tree
2012-07-12	Diane Trout	Use lane 1s matrix when pipeline was set to build matrix...	commit \| commitdiff \| tree
2012-07-12	Diane Trout	Clean up flowcell ID detection and add support for...	commit \| commitdiff \| tree
2012-07-12	Diane Trout	fix a variable name typo	commit \| commitdiff \| tree
2012-07-12	Diane Trout	Re-enable some suppressed tests and update them for...	commit \| commitdiff \| tree
2012-07-12	Diane Trout	whitespace fix.	commit \| commitdiff \| tree
2012-07-11	Diane Trout	Test reading the xml out of a file too.	commit \| commitdiff \| tree
2012-07-10	Diane Trout	Fix import statement and typos for genomemap	commit \| commitdiff \| tree
2012-07-10	Diane Trout	Create a class to convert contig names into genome...	commit \| commitdiff \| tree
2012-07-10	Diane Trout	Guess genome name for building compressed mapping counts...	commit \| commitdiff \| tree
2012-07-10	Diane Trout	Give some failover defaults to printer settings.	commit \| commitdiff \| tree
2012-07-07	Diane Trout	Use sample keys when looking up lane parameters.	commit \| commitdiff \| tree
2012-07-06	Diane Trout	A few python 2.6 test case incompatibilities.	commit \| commitdiff \| tree
2012-07-06	Diane Trout	Switch to regular dictionary instead of ordered dictionary.	commit \| commitdiff \| tree
2012-07-05	Diane Trout	Massively rework eland file finding and indexing.	commit \| commitdiff \| tree
2012-07-05	Diane Trout	Rename chromosome in hiseq test set to match our fake...	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Disable debug messages for each scanned eland file...	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Support multiple having an eland file split into multiple...	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Some minor tweaks to rta 1.12 testing.	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Properly code in tabs for simulated hiseq export files	commit \| commitdiff \| tree
2012-06-30	Diane Trout	Use different tags indicating gerald or casava style...	commit \| commitdiff \| tree
2012-06-27	Diane Trout	Add script for updating database to data run versions...	commit \| commitdiff \| tree
2012-06-27	Diane Trout	If I'm going to make a call to logger, I really should...	commit \| commitdiff \| tree
2012-06-27	Diane Trout	Only allow one default cluster station or sequencer...	commit \| commitdiff \| tree
2012-06-27	Diane Trout	Only allow one default cluster station or sequencer...	commit \| commitdiff \| tree
2012-06-27	Diane Trout	Auto-generate a secret key for django and store in...	commit \| commitdiff \| tree
2012-06-26	Diane Trout	Add the ability to specify default cluster station...	commit \| commitdiff \| tree
2012-06-26	Diane Trout	reformatting to be more pep8 like	commit \| commitdiff \| tree
2012-06-25	Diane Trout	Convert dictionary comprehension to dict(generator...	commit \| commitdiff \| tree
2012-06-25	Diane Trout	Adapt select strike-out widget to django 1.2	commit \| commitdiff \| tree
2012-06-23	Diane Trout	Forgot to add the css file to add 'active' state to...	commit \| commitdiff \| tree
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