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htsworkflow.git
2012-09-18 Diane Troutemail.bcc should be a list, not a nested list. commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutTest RDFa encoded information for flowcell & libraries. commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-28 Diane Troutsanitize_literal had trouble with empty strings. commit | commitdiff | tree | snapshot
2012-08-28 Diane TroutAttempt to come up with regexp to detect hiseq formatte... commit | commitdiff | tree | snapshot
2012-08-09 Diane TroutFix some mismatches between variable names in python... commit | commitdiff | tree | snapshot
2012-08-07 Diane TroutCreate a lane to file name turtle data file commit | commitdiff | tree | snapshot
2012-08-07 Diane TroutSimplify code to see if we already have a DataRun created. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutDon't link to lane for the raw result files section. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutUse default printer settings again. commit | commitdiff | tree | snapshot
2012-08-06 Diane TroutTest proper setting of sequence project variable commit | commitdiff | tree | snapshot
2012-08-02 Diane TroutTest more of the sequences class. commit | commitdiff | tree | snapshot
2012-08-02 Diane TroutFix a few more formatting issues with the geo template commit | commitdiff | tree | snapshot
2012-08-01 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-08-01 Diane TroutGEO wanted both files for a paired lane to be on a... commit | commitdiff | tree | snapshot
2012-07-27 Diane TroutFix issues introduced when switching to the django... commit | commitdiff | tree | snapshot
2012-07-25 Diane TroutActually we want to capture the unanalyzed lanes if... commit | commitdiff | tree | snapshot
2012-07-24 Diane TroutGet actual list of sequencers used for a library. commit | commitdiff | tree | snapshot
2012-07-23 Diane TroutUpdate to our current IPs. I'm tired of syncdb overwrit... commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutAdapt building qseq or srf archives to use SampleKey... commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutUpdate save_raw_data to SampleKey api commit | commitdiff | tree | snapshot
2012-07-19 Diane TroutAdd in a few more genomes to detection code commit | commitdiff | tree | snapshot
2012-07-17 Diane TroutFix library viewing code to read HiSeq run xmls. commit | commitdiff | tree | snapshot
2012-07-16 Diane TroutRemove default sequence-format so the new auto-detector... commit | commitdiff | tree | snapshot
2012-07-14 Diane TroutAttempt to guess raw sequence type for a run. commit | commitdiff | tree | snapshot
2012-07-13 Diane TroutFix a refactoring error commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutLook for RTAConfig.xml file generated by pipeline 1... commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutUse lane 1s matrix when pipeline was set to build matri... commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutClean up flowcell ID detection and add support for... commit | commitdiff | tree | snapshot
2012-07-12 Diane Troutfix a variable name typo commit | commitdiff | tree | snapshot
2012-07-12 Diane TroutRe-enable some suppressed tests and update them for... commit | commitdiff | tree | snapshot
2012-07-12 Diane Troutwhitespace fix. commit | commitdiff | tree | snapshot
2012-07-11 Diane TroutTest reading the xml out of a file too. commit | commitdiff | tree | snapshot
2012-07-10 Diane TroutFix import statement and typos for genomemap commit | commitdiff | tree | snapshot
2012-07-10 Diane TroutCreate a class to convert contig names into genome... commit | commitdiff | tree | snapshot
2012-07-10 Diane TroutGuess genome name for building compressed mapping count... commit | commitdiff | tree | snapshot
2012-07-10 Diane TroutGive some failover defaults to printer settings. commit | commitdiff | tree | snapshot
2012-07-07 Diane TroutUse sample keys when looking up lane parameters. commit | commitdiff | tree | snapshot
2012-07-06 Diane TroutA few python 2.6 test case incompatibilities. commit | commitdiff | tree | snapshot
2012-07-06 Diane TroutSwitch to regular dictionary instead of ordered dictionary. commit | commitdiff | tree | snapshot
2012-07-05 Diane TroutMassively rework eland file finding and indexing. commit | commitdiff | tree | snapshot
2012-07-05 Diane TroutRename chromosome in hiseq test set to match our fake... commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutDisable debug messages for each scanned eland file... commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutSupport multiple having an eland file split into multip... commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutSome minor tweaks to rta 1.12 testing. commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutProperly code in tabs for simulated hiseq export files commit | commitdiff | tree | snapshot
2012-06-30 Diane TroutUse different tags indicating gerald or casava style... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutAdd script for updating database to data run versions... v0.5.5 commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutIf I'm going to make a call to logger, I really should... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutAuto-generate a secret key for django and store in... commit | commitdiff | tree | snapshot
2012-06-26 Diane TroutAdd the ability to specify default cluster station... commit | commitdiff | tree | snapshot
2012-06-26 Diane Troutreformatting to be more pep8 like commit | commitdiff | tree | snapshot
2012-06-25 Diane TroutConvert dictionary comprehension to dict(generator... commit | commitdiff | tree | snapshot
2012-06-25 Diane TroutAdapt select strike-out widget to django 1.2 commit | commitdiff | tree | snapshot
2012-06-23 Diane TroutForgot to add the css file to add 'active' state to... commit | commitdiff | tree | snapshot
2012-06-23 Diane TroutAdd an 'active' state to the sequencers. commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutShow software version information on datarun page commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutSave pipeline version information from run_xml into... commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutAdd links to libraries and submission to data loaded... commit | commitdiff | tree | snapshot
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-06-15 Diane TroutMove typeof. I think its now getting parsed by rapper... commit | commitdiff | tree | snapshot
2012-06-14 Diane TroutImport information from NCBI SRA into a RDF model. commit | commitdiff | tree | snapshot
2012-06-14 Diane TroutSlightly different sort order for finding libraries commit | commitdiff | tree | snapshot
2012-06-12 Diane TroutAdd a software (name) property to firecrest, ipar,... commit | commitdiff | tree | snapshot
2012-06-11 Diane TroutReturn a gerald version number as a number and not... commit | commitdiff | tree | snapshot
2012-06-07 Diane TroutAdd instrument ID and model to sequencer table commit | commitdiff | tree | snapshot
2012-06-02 Diane TroutSplit lane parameters into seperate classes for GA... commit | commitdiff | tree | snapshot
2012-05-31 Diane TroutFixup docstring to be clearer to others commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-05-25 Diane Troutreplace tab charcter with spaces in the multiplex index... live commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutFix Multiplex index pluralization commit | commitdiff | tree | snapshot
2012-05-23 Diane TroutGenerate html reports when doing sparql queries with... commit | commitdiff | tree | snapshot
2012-05-16 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-05-16 Diane TroutTweak some test code to work with librdf 1.0.10 commit | commitdiff | tree | snapshot
2012-05-16 Diane Troutupdate summary.py to extract data from HiSeq runs. commit | commitdiff | tree | snapshot
2012-05-15 Diane TroutFix bugs introduduced by the improved HiSeq runfolder... commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutI found this version more useful for trying to commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutProperly constructing the geo soft file really needed... commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutPrepare for submitting data to geo by: commit | commitdiff | tree | snapshot
2012-05-10 Diane TroutMinimal changes needed to get raw data archived for... commit | commitdiff | tree | snapshot
2012-05-04 Diane Trout100% test coverage for alphanum.py commit | commitdiff | tree | snapshot
2012-05-03 Diane TroutRename a cell-line since we're now using "treatment... commit | commitdiff | tree | snapshot
2012-04-17 Diane TroutAdd ability to override location to tar and lftp commands commit | commitdiff | tree | snapshot
2012-04-17 Diane TroutRename global logger to LOGGER to be more PEP8 like commit | commitdiff | tree | snapshot
2012-04-16 Diane TroutFix a typo and a missing .items() from the change of... commit | commitdiff | tree | snapshot
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-04-12 Diane TroutExtend the adapter id field to support the dual indexed... commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... commit | commitdiff | tree | snapshot
2012-04-02 Diane TroutRemove a dead form commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutChange to using django templates for generating condor... commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutImprove a settings error message, as it was confusing... commit | commitdiff | tree | snapshot
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software