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allow running without using the gui
2006-03-30 Diane Troutallow running without using the gui
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2006-03-30 Diane Troutbetter setup dialog label names
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2006-03-29 Diane Troutkeep the sequence view at higher zoom level
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2006-03-29 Diane Troutmotifs should render on top of annotations
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2006-03-29 Diane Troutmake annotations big enough to show up
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2006-03-29 Diane TroutView sequence alignment at non default thresholds
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2006-03-29 Diane Troutchoose alignment needs to force the sequences to redraw
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2006-03-29 Diane TroutProvide a zoom widget in MussaAlignedWindow
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2006-03-29 Diane TroutMove zoom spinbox into its own widget
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2006-03-29 Diane TroutsetAlignment, as a target of a qt signal, needs to...
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2006-03-29 Diane Troutignore some generated product
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2006-03-28 Diane Troutfix more warnings
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2006-03-28 Diane Troutthreshold widget shows both base pair and percents
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2006-03-28 Diane Troutrecover threshold and window size
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2006-03-28 Diane Troutimprove os x makefiles
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2006-03-28 Diane Troutuse qt resources for icons
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2006-03-23 Diane Troutdisable coloring things with reverse compliment colors.
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2006-03-23 Diane Troutdefine an analysis should keep settings
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2006-03-23 Diane Troutchange from slider to spinner for threshold
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2006-03-23 Diane Troutbetter sidebar rendering
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2006-03-22 Diane Troutfix selection box coordinate bugs
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2006-03-22 Diane Troutspurious mouseReleaseEvent caused a crash
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2006-03-22 Diane Troutfinish dialog box to setup an analysis
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2006-03-22 Diane TroutIncrease line thickness
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2006-03-22 Diane Troutprovide more information in the about box.
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2006-03-22 Diane Troutbless osx Qt components and make a .dmg
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2006-03-21 Diane Trouttell doxygen about motif_editor and mussa_setup_dialog
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2006-03-21 Diane Troutprovide a user interface to edit motifs
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2006-03-21 Diane Troutresizing should also change the sequence position indicators
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2006-03-21 Diane Trouthopefully this fixes the off by one error
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2006-03-21 Diane Troutwhen changing alignment the position also needs to...
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2006-03-21 Diane Troutset inital left position
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2006-03-20 Diane Troutresizing increases the viewable world
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2006-03-20 Diane Troutchanging the set of links does need to redraw
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2006-03-20 Diane TroutMussa aligned sequence view seems to work
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2006-03-20 Diane Troutdont crash when loading a new analysis
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2006-03-19 Diane Troutdraw alignment lines
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2006-03-19 Diane Troutrender sequence correctly in mussa aligned window
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2006-03-19 Diane Troutimplement zoom in terms of base pairs per pixel
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2006-03-18 Diane Troutcenter on path
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2006-03-18 Diane Troutdefine window for showing a mussa alignment
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2006-03-17 Diane Troutrefactored PathScene into SequenceBrowserWidget
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2006-03-16 Diane Troutspecify where the gl.h is on a mac
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2006-03-16 Diane Troutfix motif coloring
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2006-03-16 Diane Trouttrack labels
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2006-03-16 Diane Troutre-implement selection
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2006-03-16 Diane Troutcomputation for a path segment was wrong
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2006-03-15 Diane Troutfix the scrollbar
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2006-03-15 Diane Troutmake the path view independent of type of connection
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2006-03-14 Diane Troutmake doxygen output more focused
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2006-03-14 Diane Troutload and display a motif list
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2006-03-14 Diane Troutdocument win_append, thres_append
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2006-03-14 Diane Troutjust load the sequence
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2006-03-14 Diane Troutrename motif class used in fltk code to fltk_motif
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2006-03-14 Diane Troutattach motifs to a sequence object
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2006-03-12 Diane Troutimplement a color mapper class
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2006-03-12 Diane Trouttell darcs whats boring to make whatsnew more useful
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2006-03-12 Diane TroutThere can be only one (filename convention)
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2006-03-11 Diane TroutThicker bars, better letters
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2006-03-11 Diane Troutmake it easier to build on win32
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2006-03-11 Diane Troutrefactor glsequence to be more testable
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2006-03-09 Diane Troutwe can scroll
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2006-03-09 Diane Troutresolve complicated merge conflict
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2006-03-08 Diane Troutfix segfault when changing soft threshold when no analysis...
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2006-03-06 Diane Troutdrawing sequence basepairs.
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2006-03-05 Diane Troutmild improvements to demo python sequence view
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2006-03-05 Diane Troutrecord selected track
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2006-03-04 Diane Troutpython wrap mussa, nwaypaths, and conservedpaths
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2006-03-04 Diane Troutselect paths and highlight them
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2006-03-03 Diane Troutimprove error handling for loading
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2006-03-03 Diane Troutwe can load parameter files
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2006-03-02 Diane Troutrefining an empty pathz would cause a segfault
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2006-03-02 Diane Troutconnect a spin box to the scene zoom slot
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2006-03-02 Diane Trouthacked thresholding
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2006-03-02 Diane Troutuse ConservedPath class instead of vector<int>
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2006-02-28 Diane Troutmove glsequence into "alg" component
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2006-03-01 Diane Troutcleanup nway code
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2006-03-01 Diane Troutline rendering fixes
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2006-03-08 Diane Troutmove glsequence into "alg" comonent
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2006-02-28 Diane Troutshow conservation paths
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2006-02-28 Diane Troutfix many mussa_class.cxx warnings
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2006-02-28 Diane Troutadvance_sp_itor_track was triggering an infinite loop
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2006-02-28 Diane Troutrender the sequences from the mussa analysis
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2006-02-28 Diane Troutprovide an annotation for our example data
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2006-02-25 Diane Troutput the fake lines at a clipable depth
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2006-02-25 Diane Troutadd a toolbar with toggle motifs and the base pair...
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2006-02-25 Diane Troutload mupa and show fake path scene
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2006-02-25 Diane Troutreduce warning messages in sequence.cxx
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2006-02-25 Diane Trouttell doxygen to create docs for the qt classes too
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2006-02-25 Diane Troutskeleten of a qt version of mussa
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2006-02-24 Diane Troutrefactor nway_other.cxx
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2006-02-24 Diane Troutuse exceptions to indicate Mussa::analyze failed
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2006-02-24 Diane Troutsubanalysis menu option wont crash mussa
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2006-02-24 Diane Troutonly include headers by names relative to project base...
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2006-02-23 Diane Troutbuild mussa with CXXFLAGS, so I can run gdb.
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2006-02-23 Diane Troutfixing the number of sequences at setup is silly
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2006-02-23 Diane Troutfix inability to do reverse compliments
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2006-02-23 Diane Troutmore thoroughly document FLPs
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2006-02-23 Diane Troutuse boost to delete my temp file
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2006-02-23 Diane Troutrefactor and test FLPs
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MUSSA multi-species alignment tool