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test motif editor pointers
[mussa.git]
/
alg
/
2006-06-30
Diane Trout
fix boost::python sequence interface
tree
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commitdiff
2006-06-30
Diane Trout
store motifs as sequences instead of strings
tree
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commitdiff
2006-06-29
Diane Trout
set_motifs should erase the previous motifs
tree
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commitdiff
2006-06-29
Diane Trout
allow specifying a name for a sequence
tree
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commitdiff
2006-06-29
Diane Trout
update the annotation grammer to make species name...
tree
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commitdiff
2006-06-29
Diane Trout
break the core of add_motifs loop into a seperate function
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commitdiff
2006-06-23
Diane Trout
Getting closer to a subanalysis mode
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commitdiff
2006-06-21
Diane Trout
More progress toward subanalysis
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commitdiff
2006-06-21
Diane Trout
use a specific exception when nextTo breaks
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commitdiff
2006-06-20
Diane Trout
extend annotation names and types to allow punctuation
tree
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commitdiff
2006-06-17
Diane Trout
make Sequence a subclass of std::string
tree
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commitdiff
2006-06-16
Diane Trout
remove unnecessary class decoration
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commitdiff
2006-06-16
Diane Trout
ticket:104 fix some pointer problems with MussaAlignedW...
tree
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commitdiff
2006-06-14
Diane Trout
AMD64 build support
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commitdiff
2006-06-14
Diane Trout
Make cmake happier about my target declariation order
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commitdiff
2006-06-14
Diane Trout
reformat some braces
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commitdiff
2006-06-13
Diane Trout
include the sequence coordinates when copying sequence
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commitdiff
2006-06-12
Brandon King
alg/glseqbrowser.cpp:127: error: jump to case label
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commitdiff
2006-06-12
Diane Trout
Actually copy our selected sequence to the clipboard
tree
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commitdiff
2006-06-10
Diane Trout
partial implementation of sequence track copy
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commitdiff
2006-06-09
Diane Trout
More robust eol handling for Sequence::load_fasta
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commitdiff
2006-06-08
Diane Trout
improve fasta parsing
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commitdiff
2006-06-08
Diane Trout
Report error when sequence couldn't be loaded
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commitdiff
2006-06-06
Diane Trout
keep track of how far through a seqcomp we've gotten
tree
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commitdiff
2006-06-03
Diane Trout
use Qt Signals & Slots for progress tracking
tree
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commitdiff
2006-05-27
Diane Trout
add callback for tracking analysis progress
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commitdiff
2006-05-27
Diane Trout
rename [gset_soft_thres to [gs]et_soft_threshold]
tree
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commitdiff
2006-05-25
Diane Trout
add some documentation for glseqbrowser::viewport*
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commitdiff
2006-05-20
Diane Trout
turn color back on
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commitdiff
2006-05-20
Diane Trout
ticket:62 fix local alignment
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commitdiff
2006-05-18
Diane Trout
expose more of the sequence class to python
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commitdiff
2006-05-17
Diane Trout
finish implementing annotation by sequence
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commitdiff
2006-05-17
Diane Trout
switch to a character based spirit parser
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commitdiff
2006-05-17
Diane Trout
try to read fasta blocks in the annotation file
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commitdiff
2006-05-17
Diane Trout
use spirit parser for reading annot file
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commitdiff
2006-05-16
Diane Trout
add annotations by sequence string
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commitdiff
2006-05-10
Diane Trout
increase the use of python in mussa
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commitdiff
2006-04-19
Diane Trout
win32 paths need some conversion
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commitdiff
2006-04-18
Diane Trout
try to get mussagl to build on win32
tree
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commitdiff
2006-04-13
Diane Trout
the fasta error message should include the filename
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commitdiff
2006-04-13
Diane Trout
fix ticket:83 throw an error when we don't have a fasta...
tree
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commitdiff
2006-04-13
Diane Trout
create an options structure to indicate if we need...
tree
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commitdiff
2006-04-12
Diane Trout
ticket:85 fix, extend code crashes with 1 path
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commitdiff
2006-04-12
Diane Trout
record cmake commands to deal with some dependency...
tree
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commitdiff
2006-04-12
Diane Trout
AMD64 needs -fPIC for mussa_core
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commitdiff
2006-04-12
Diane Trout
build the python interface
tree
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commitdiff
2006-04-11
Diane Trout
minor fixes for older buildsystems
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commitdiff
2006-04-08
Diane Trout
rename _LIB to _LIBRARY to be more consistent with...
tree
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commitdiff
2006-04-07
Diane Trout
make include gl.h multiplatform
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commitdiff
2006-04-07
Diane Trout
switch to using boost::filesystem
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commitdiff
2006-04-06
Diane Trout
cmake setupfiles
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commitdiff
2006-03-30
Diane Trout
allow running without using the gui
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commitdiff
2006-03-29
Diane Trout
keep the sequence view at higher zoom level
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commitdiff
2006-03-29
Diane Trout
motifs should render on top of annotations
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commitdiff
2006-03-29
Diane Trout
make annotations big enough to show up
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commitdiff
2006-03-29
Diane Trout
View sequence alignment at non default thresholds
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commitdiff
2006-03-29
Diane Trout
Move zoom spinbox into its own widget
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commitdiff
2006-03-28
Diane Trout
fix more warnings
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commitdiff
2006-03-28
Diane Trout
threshold widget shows both base pair and percents
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commitdiff
2006-03-28
Diane Trout
recover threshold and window size
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commitdiff
2006-03-28
Diane Trout
improve os x makefiles
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commitdiff
2006-03-23
Diane Trout
disable coloring things with reverse compliment colors.
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commitdiff
2006-03-23
Diane Trout
better sidebar rendering
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commitdiff
2006-03-22
Diane Trout
fix selection box coordinate bugs
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commitdiff
2006-03-22
Diane Trout
finish dialog box to setup an analysis
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commitdiff
2006-03-22
Diane Trout
Increase line thickness
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commitdiff
2006-03-21
Diane Trout
provide a user interface to edit motifs
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commitdiff
2006-03-21
Diane Trout
hopefully this fixes the off by one error
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commitdiff
2006-03-20
Diane Trout
resizing increases the viewable world
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commitdiff
2006-03-20
Diane Trout
Mussa aligned sequence view seems to work
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commitdiff
2006-03-19
Diane Trout
draw alignment lines
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commitdiff
2006-03-19
Diane Trout
render sequence correctly in mussa aligned window
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commitdiff
2006-03-19
Diane Trout
implement zoom in terms of base pairs per pixel
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commitdiff
2006-03-18
Diane Trout
center on path
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commitdiff
2006-03-18
Diane Trout
define window for showing a mussa alignment
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commitdiff
2006-03-17
Diane Trout
refactored PathScene into SequenceBrowserWidget
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commitdiff
2006-03-16
Diane Trout
track labels
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commitdiff
2006-03-16
Diane Trout
re-implement selection
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commitdiff
2006-03-16
Diane Trout
computation for a path segment was wrong
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commitdiff
2006-03-15
Diane Trout
make the path view independent of type of connection
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commitdiff
2006-03-14
Diane Trout
load and display a motif list
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commitdiff
2006-03-14
Diane Trout
document win_append, thres_append
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commitdiff
2006-03-14
Diane Trout
just load the sequence
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commitdiff
2006-03-14
Diane Trout
attach motifs to a sequence object
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commitdiff
2006-03-12
Diane Trout
implement a color mapper class
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commitdiff
2006-03-12
Diane Trout
There can be only one (filename convention)
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commitdiff
2006-03-11
Diane Trout
Thicker bars, better letters
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commitdiff
2006-03-11
Diane Trout
refactor glsequence to be more testable
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commitdiff
2006-03-09
Diane Trout
resolve complicated merge conflict
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commitdiff
2006-03-08
Diane Trout
fix segfault when changing soft threshold when no analy...
tree
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commitdiff
2006-03-06
Diane Trout
drawing sequence basepairs.
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commitdiff
2006-03-04
Diane Trout
python wrap mussa, nwaypaths, and conservedpaths
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commitdiff
2006-03-04
Diane Trout
select paths and highlight them
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commitdiff
2006-03-03
Diane Trout
improve error handling for loading
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commitdiff
2006-03-03
Diane Trout
we can load parameter files
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commitdiff
2006-03-02
Diane Trout
refining an empty pathz would cause a segfault
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commitdiff
2006-03-02
Diane Trout
hacked thresholding
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commitdiff
2006-03-02
Diane Trout
use ConservedPath class instead of vector<int>
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commitdiff
2006-02-28
Diane Trout
move glsequence into "alg" component
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commitdiff
2006-03-01
Diane Trout
cleanup nway code
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commitdiff
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