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[mussa.git] / alg /
2006-06-17 Diane Troutmake Sequence a subclass of std::string tree | commitdiff
2006-06-16 Diane Troutremove unnecessary class decoration tree | commitdiff
2006-06-16 Diane Troutticket:104 fix some pointer problems with MussaAlignedW... tree | commitdiff
2006-06-14 Diane TroutAMD64 build support tree | commitdiff
2006-06-14 Diane TroutMake cmake happier about my target declariation order tree | commitdiff
2006-06-14 Diane Troutreformat some braces tree | commitdiff
2006-06-13 Diane Troutinclude the sequence coordinates when copying sequence tree | commitdiff
2006-06-12 Brandon Kingalg/glseqbrowser.cpp:127: error: jump to case label tree | commitdiff
2006-06-12 Diane TroutActually copy our selected sequence to the clipboard tree | commitdiff
2006-06-10 Diane Troutpartial implementation of sequence track copy tree | commitdiff
2006-06-09 Diane TroutMore robust eol handling for Sequence::load_fasta tree | commitdiff
2006-06-08 Diane Troutimprove fasta parsing tree | commitdiff
2006-06-08 Diane TroutReport error when sequence couldn't be loaded tree | commitdiff
2006-06-06 Diane Troutkeep track of how far through a seqcomp we've gotten tree | commitdiff
2006-06-03 Diane Troutuse Qt Signals & Slots for progress tracking tree | commitdiff
2006-05-27 Diane Troutadd callback for tracking analysis progress tree | commitdiff
2006-05-27 Diane Troutrename [gset_soft_thres to [gs]et_soft_threshold] tree | commitdiff
2006-05-25 Diane Troutadd some documentation for glseqbrowser::viewport* tree | commitdiff
2006-05-20 Diane Troutturn color back on tree | commitdiff
2006-05-20 Diane Troutticket:62 fix local alignment tree | commitdiff
2006-05-18 Diane Troutexpose more of the sequence class to python tree | commitdiff
2006-05-17 Diane Troutfinish implementing annotation by sequence tree | commitdiff
2006-05-17 Diane Troutswitch to a character based spirit parser tree | commitdiff
2006-05-17 Diane Trouttry to read fasta blocks in the annotation file tree | commitdiff
2006-05-17 Diane Troutuse spirit parser for reading annot file tree | commitdiff
2006-05-16 Diane Troutadd annotations by sequence string tree | commitdiff
2006-05-10 Diane Troutincrease the use of python in mussa tree | commitdiff
2006-04-19 Diane Troutwin32 paths need some conversion tree | commitdiff
2006-04-18 Diane Trouttry to get mussagl to build on win32 tree | commitdiff
2006-04-13 Diane Troutthe fasta error message should include the filename tree | commitdiff
2006-04-13 Diane Troutfix ticket:83 throw an error when we don't have a fasta... tree | commitdiff
2006-04-13 Diane Troutcreate an options structure to indicate if we need... tree | commitdiff
2006-04-12 Diane Troutticket:85 fix, extend code crashes with 1 path tree | commitdiff
2006-04-12 Diane Troutrecord cmake commands to deal with some dependency... tree | commitdiff
2006-04-12 Diane TroutAMD64 needs -fPIC for mussa_core tree | commitdiff
2006-04-12 Diane Troutbuild the python interface tree | commitdiff
2006-04-11 Diane Troutminor fixes for older buildsystems tree | commitdiff
2006-04-08 Diane Troutrename _LIB to _LIBRARY to be more consistent with... tree | commitdiff
2006-04-07 Diane Troutmake include gl.h multiplatform tree | commitdiff
2006-04-07 Diane Troutswitch to using boost::filesystem tree | commitdiff
2006-04-06 Diane Troutcmake setupfiles tree | commitdiff
2006-03-30 Diane Troutallow running without using the gui tree | commitdiff
2006-03-29 Diane Troutkeep the sequence view at higher zoom level tree | commitdiff
2006-03-29 Diane Troutmotifs should render on top of annotations tree | commitdiff
2006-03-29 Diane Troutmake annotations big enough to show up tree | commitdiff
2006-03-29 Diane TroutView sequence alignment at non default thresholds tree | commitdiff
2006-03-29 Diane TroutMove zoom spinbox into its own widget tree | commitdiff
2006-03-28 Diane Troutfix more warnings tree | commitdiff
2006-03-28 Diane Troutthreshold widget shows both base pair and percents tree | commitdiff
2006-03-28 Diane Troutrecover threshold and window size tree | commitdiff
2006-03-28 Diane Troutimprove os x makefiles tree | commitdiff
2006-03-23 Diane Troutdisable coloring things with reverse compliment colors. tree | commitdiff
2006-03-23 Diane Troutbetter sidebar rendering tree | commitdiff
2006-03-22 Diane Troutfix selection box coordinate bugs tree | commitdiff
2006-03-22 Diane Troutfinish dialog box to setup an analysis tree | commitdiff
2006-03-22 Diane TroutIncrease line thickness tree | commitdiff
2006-03-21 Diane Troutprovide a user interface to edit motifs tree | commitdiff
2006-03-21 Diane Trouthopefully this fixes the off by one error tree | commitdiff
2006-03-20 Diane Troutresizing increases the viewable world tree | commitdiff
2006-03-20 Diane TroutMussa aligned sequence view seems to work tree | commitdiff
2006-03-19 Diane Troutdraw alignment lines tree | commitdiff
2006-03-19 Diane Troutrender sequence correctly in mussa aligned window tree | commitdiff
2006-03-19 Diane Troutimplement zoom in terms of base pairs per pixel tree | commitdiff
2006-03-18 Diane Troutcenter on path tree | commitdiff
2006-03-18 Diane Troutdefine window for showing a mussa alignment tree | commitdiff
2006-03-17 Diane Troutrefactored PathScene into SequenceBrowserWidget tree | commitdiff
2006-03-16 Diane Trouttrack labels tree | commitdiff
2006-03-16 Diane Troutre-implement selection tree | commitdiff
2006-03-16 Diane Troutcomputation for a path segment was wrong tree | commitdiff
2006-03-15 Diane Troutmake the path view independent of type of connection tree | commitdiff
2006-03-14 Diane Troutload and display a motif list tree | commitdiff
2006-03-14 Diane Troutdocument win_append, thres_append tree | commitdiff
2006-03-14 Diane Troutjust load the sequence tree | commitdiff
2006-03-14 Diane Troutattach motifs to a sequence object tree | commitdiff
2006-03-12 Diane Troutimplement a color mapper class tree | commitdiff
2006-03-12 Diane TroutThere can be only one (filename convention) tree | commitdiff
2006-03-11 Diane TroutThicker bars, better letters tree | commitdiff
2006-03-11 Diane Troutrefactor glsequence to be more testable tree | commitdiff
2006-03-09 Diane Troutresolve complicated merge conflict tree | commitdiff
2006-03-08 Diane Troutfix segfault when changing soft threshold when no analy... tree | commitdiff
2006-03-06 Diane Troutdrawing sequence basepairs. tree | commitdiff
2006-03-04 Diane Troutpython wrap mussa, nwaypaths, and conservedpaths tree | commitdiff
2006-03-04 Diane Troutselect paths and highlight them tree | commitdiff
2006-03-03 Diane Troutimprove error handling for loading tree | commitdiff
2006-03-03 Diane Troutwe can load parameter files tree | commitdiff
2006-03-02 Diane Troutrefining an empty pathz would cause a segfault tree | commitdiff
2006-03-02 Diane Trouthacked thresholding tree | commitdiff
2006-03-02 Diane Troutuse ConservedPath class instead of vector<int> tree | commitdiff
2006-02-28 Diane Troutmove glsequence into "alg" component tree | commitdiff
2006-03-01 Diane Troutcleanup nway code tree | commitdiff
2006-03-01 Diane Troutline rendering fixes tree | commitdiff
2006-03-08 Diane Troutmove glsequence into "alg" comonent tree | commitdiff
2006-02-28 Diane Troutshow conservation paths tree | commitdiff
2006-02-28 Diane Troutfix many mussa_class.cxx warnings tree | commitdiff
2006-02-28 Diane Troutadvance_sp_itor_track was triggering an infinite loop tree | commitdiff
2006-02-28 Diane Troutrender the sequences from the mussa analysis tree | commitdiff
2006-02-25 Diane Troutreduce warning messages in sequence.cxx tree | commitdiff
2006-02-24 Diane Troutrefactor nway_other.cxx tree | commitdiff
2006-02-24 Diane Troutuse exceptions to indicate Mussa::analyze failed tree | commitdiff
2006-02-24 Diane Troutonly include headers by names relative to project base... tree | commitdiff
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MUSSA multi-species alignment tool